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Aliases for LOC100130370 Gene

Aliases for LOC100130370 Gene

  • Uncharacterized LOC100130370 3
  • AC110285.1 5

External Ids for LOC100130370 Gene

Previous GeneCards Identifiers for LOC100130370 Gene

  • GC17U901001
  • GC17M076969
  • GC17M079352

Summaries for LOC100130370 Gene

GeneCards Summary for LOC100130370 Gene

LOC100130370 (Uncharacterized LOC100130370) is a Protein Coding gene.

Additional gene information for LOC100130370 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130370 Gene

Genomics for LOC100130370 Gene

GeneHancer (GH) Regulatory Elements for LOC100130370 Gene

Promoters and enhancers for LOC100130370 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I081384 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.8 -9.3 -9307 22.4 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF263 BAHCC1 ENSG00000279692 ENSG00000262877 CEP131 GPS1 HGS ENSG00000260011 FAAP100 ENSG00000260369 ENSG00000265678
GH17I081508 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.5 -127.6 -127644 11.7 FEZF1 DMAP1 IRF4 SLC30A9 ZNF213 ZNF143 SP3 NFYC SSRP1 ZNF610 ACTG1 FSCN2 ENSG00000229848 HGS ALYREF HEXDC FAAP100 ENSG00000265678 TEPSIN ENSG00000260563
GH17I080544 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.4 +841.4 841434 2.3 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B RPTOR ENSG00000262877 EIF4A3 ACTG1 TEPSIN LOC100130370 SGSH NPTX1 RPL32P31 LOC105371922
GH17I081664 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.4 -280.0 -280041 3.7 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 CCDC137 OXLD1 ARL16 OGFOD3 HGS FAAP100 ALYREF ENSG00000262877 FOXK2 CEP131
GH17I082064 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.4 -678.9 -678878 2.4 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 ZNF766 DUS1L PIR58356 ENSG00000263321 TBCD ENSG00000262877 GPS1 OGFOD3 CCDC57 ENSG00000265678 FAAP100
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130370 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130370 gene promoter:

Genomic Locations for LOC100130370 Gene

Genomic Locations for LOC100130370 Gene
chr17:81,375,498-81,386,797
(GRCh38/hg38)
Size:
11,300 bases
Orientation:
Minus strand
chr17:79,349,801-79,359,160
(GRCh37/hg19)

Genomic View for LOC100130370 Gene

Genes around LOC100130370 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130370 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130370 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130370 Gene

Proteins for LOC100130370 Gene

Post-translational modifications for LOC100130370 Gene

No Post-translational modifications

Other Protein References for LOC100130370 Gene

No data available for DME Specific Peptides for LOC100130370 Gene

Domains & Families for LOC100130370 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130370 Gene

Function for LOC100130370 Gene

Phenotypes From GWAS Catalog for LOC100130370 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130370 Gene

Localization for LOC100130370 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130370 Gene

Pathways & Interactions for LOC100130370 Gene

SuperPathways for LOC100130370 Gene

No Data Available

Interacting Proteins for LOC100130370 Gene

Gene Ontology (GO) - Biological Process for LOC100130370 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130370 Gene

Drugs & Compounds for LOC100130370 Gene

No Compound Related Data Available

Transcripts for LOC100130370 Gene

mRNA/cDNA for LOC100130370 Gene

(7) REFSEQ mRNAs :
(0) Additional mRNA sequences :
-
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100130370 Gene

Uncharacterized LOC100130370:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130370 Gene

No ASD Table

Relevant External Links for LOC100130370 Gene

GeneLoc Exon Structure for
LOC100130370

Expression for LOC100130370 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130370 Gene

SOURCE GeneReport for Unigene cluster for LOC100130370 Gene:

Hs.646594
genes like me logo Genes that share expression patterns with LOC100130370: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130370 Gene

Orthologs for LOC100130370 Gene

Evolution for LOC100130370 Gene

ENSEMBL:
Gene Tree for LOC100130370 (if available)
TreeFam:
Gene Tree for LOC100130370 (if available)

No data available for Orthologs for LOC100130370 Gene

Paralogs for LOC100130370 Gene

No data available for Paralogs for LOC100130370 Gene

Variants for LOC100130370 Gene

Sequence variations from dbSNP and Humsavar for LOC100130370 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000315326 -- 81,392,327(-) G/A 5_prime_UTR_variant, genic_upstream_transcript_variant
rs1000946864 -- 81,383,861(-) C/G genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1001087606 -- 81,388,315(-) G/A 5_prime_UTR_variant, genic_upstream_transcript_variant
rs1001219217 -- 81,388,587(-) G/A 5_prime_UTR_variant, genic_upstream_transcript_variant
rs1001370393 -- 81,392,767(-) C/G 5_prime_UTR_variant, genic_upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130370 Gene

Variant ID Type Subtype PubMed ID
esv26223 CNV gain+loss 19812545
nsv428351 CNV gain 18775914
nsv576173 CNV loss 21841781
nsv576174 CNV loss 21841781
nsv576175 CNV loss 21841781
nsv828128 CNV loss 20364138
nsv952389 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130370 Gene

Disorders for LOC100130370 Gene

Additional Disease Information for LOC100130370

No disorders were found for LOC100130370 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130370 Gene

Publications for LOC100130370 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC100130370 Gene

Sources for LOC100130370 Gene

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