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Aliases for LOC100130357 Gene

Aliases for LOC100130357 Gene

  • Uncharacterized LOC100130357 3
  • Uncharacterized Protein LOC100130357 3
  • AL008729.1 5

External Ids for LOC100130357 Gene

Previous GeneCards Identifiers for LOC100130357 Gene

  • GC06M013388
  • GC06M013403
  • GC06M013295
  • GC06M013228
  • GC06M013291

Summaries for LOC100130357 Gene

GeneCards Summary for LOC100130357 Gene

LOC100130357 (Uncharacterized LOC100130357) is a Protein Coding gene.

Additional gene information for LOC100130357 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130357 Gene

Genomics for LOC100130357 Gene

GeneHancer (GH) Regulatory Elements for LOC100130357 Gene

Promoters and enhancers for LOC100130357 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J013301 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 16.1 -6.2 -6203 4.4 PKNOX1 FOXA2 SMAD1 SIN3A IRF4 FOS JUNB ZHX2 ZNF592 KAT8 TBC1D7 LOC100130357 ENSG00000272379 SIRT5 GFOD1 GC06P013319
GH06J013271 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 12.7 +23.1 23056 4.7 HDGF HNRNPUL1 PKNOX1 SMAD1 ARNT IRF4 POLR2B ZNF766 ZNF143 ZNF592 TBC1D7 RPL15P3 LOC100130357 SIRT5 ENSG00000272379 PHACTR1 PIR62166 LOC105374933
GH06J013258 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.4 +36.4 36365 4.3 HDGF PKNOX1 RB1 STAT5A BMI1 BATF KLF5 IRF4 ZNF207 ATF7 TBC1D7 RNU1-11P LOC100130357 PHACTR1 GFOD1 RANBP9 PIR62166 LOC105374933
GH06J013277 Enhancer 0.7 ENCODE dbSUPER 12.7 +19.4 19374 1.2 CTCF IRF3 TRIM22 ZNF143 EBF1 BCLAF1 RAD21 TBC1D7 LOC100130357 PIR62166 LOC105374933 PHACTR1
GH06J013280 Enhancer 0.4 ENCODE dbSUPER 13.4 +16.7 16727 0.9 TBC1D7 LOC100130357 ENSG00000272379 PIR62166 LOC105374933 PHACTR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130357 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130357 gene promoter:
  • Nkx2-5
  • Arnt
  • LUN-1
  • MEF-2A
  • MEF-2
  • aMEF-2
  • USF-1
  • USF1
  • AML1a
  • POU3F1

Genomic Locations for LOC100130357 Gene

Genomic Locations for LOC100130357 Gene
chr6:13,264,861-13,297,297
(GRCh38/hg38)
Size:
32,437 bases
Orientation:
Minus strand
chr6:13,265,093-13,295,818
(GRCh37/hg19)
Size:
30,726 bases
Orientation:
Minus strand

Genomic View for LOC100130357 Gene

Genes around LOC100130357 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130357 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130357 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130357 Gene

Proteins for LOC100130357 Gene

Post-translational modifications for LOC100130357 Gene

No Post-translational modifications

Other Protein References for LOC100130357 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100130357 Gene

Domains & Families for LOC100130357 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130357 Gene

Function for LOC100130357 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100130357

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130357 Gene

Localization for LOC100130357 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130357 Gene

Pathways & Interactions for LOC100130357 Gene

SuperPathways for LOC100130357 Gene

No Data Available

Interacting Proteins for LOC100130357 Gene

Gene Ontology (GO) - Biological Process for LOC100130357 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130357 Gene

Drugs & Compounds for LOC100130357 Gene

No Compound Related Data Available

Transcripts for LOC100130357 Gene

mRNA/cDNA for LOC100130357 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Unigene Clusters for LOC100130357 Gene

Uncharacterized LOC100130357:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100130357

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130357 Gene

No ASD Table

Relevant External Links for LOC100130357 Gene

GeneLoc Exon Structure for
LOC100130357

Expression for LOC100130357 Gene

SOURCE GeneReport for Unigene cluster for LOC100130357 Gene:

Hs.657498
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130357 Gene

Orthologs for LOC100130357 Gene

Evolution for LOC100130357 Gene

ENSEMBL:
Gene Tree for LOC100130357 (if available)
TreeFam:
Gene Tree for LOC100130357 (if available)

No data available for Orthologs for LOC100130357 Gene

Paralogs for LOC100130357 Gene

No data available for Paralogs for LOC100130357 Gene

Variants for LOC100130357 Gene

Sequence variations from dbSNP and Humsavar for LOC100130357 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000074935 -- 13,294,281(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000125443 -- 13,272,686(-) C/T downstream_transcript_variant
rs1000226169 -- 13,278,855(-) T/C downstream_transcript_variant, genic_downstream_transcript_variant, intron_variant
rs1000449072 -- 13,284,613(-) G/T genic_upstream_transcript_variant, intron_variant, upstream_transcript_variant
rs1000529737 -- 13,291,765(-) T/C genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130357 Gene

Disorders for LOC100130357 Gene

Additional Disease Information for LOC100130357

No disorders were found for LOC100130357 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130357 Gene

Publications for LOC100130357 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100130357 Gene

Sources for LOC100130357 Gene

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