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Aliases for LOC100130345 Gene

Aliases for LOC100130345 Gene

  • Cadherin-Related Family Member 3-Like 3
  • AC104162.1 5

External Ids for LOC100130345 Gene

Previous GeneCards Identifiers for LOC100130345 Gene

  • GC03U901100

Summaries for LOC100130345 Gene

GeneCards Summary for LOC100130345 Gene

LOC100130345 (Cadherin-Related Family Member 3-Like) is a Protein Coding gene.

Additional gene information for LOC100130345 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130345 Gene

Genomics for LOC100130345 Gene

GeneHancer (GH) Regulatory Elements for LOC100130345 Gene

Promoters and enhancers for LOC100130345 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J063910 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.9 -85.2 -85208 4 ATF1 FOXA2 ARID4B SIN3A ZNF48 ETS1 YY1 GLIS2 ZNF207 ZNF143 SCAANT1 ATXN7 PSMD6-AS2 THOC7 THOC7-AS1 LOC100130345 ADAMTS9-AS2
GH03J064005 Enhancer 0.6 dbSUPER 6 -180.6 -180558 4.2 MAFF ZNF316 POLR2A NFATC1 MAFK EMSY BCLAF1 SUPT5H ENSG00000271843 PSMD6-AS2 LOC100130345 ATXN7 THOC7 PSMD6
GH03J063846 Enhancer 0.3 ENCODE 9.1 -20.7 -20722 3 SP1 LOC100130345 THOC7-AS1 THOC7 C3orf49
GH03J063950 Enhancer 0.6 ENCODE dbSUPER 4.4 -124.2 -124182 1.8 GATA3 PRDM6 PRDM1 PSMD6-AS2 THOC7 THOC7-AS1 LOC100130345 SCAANT1 ATXN7
GH03J064348 Enhancer 0.5 ENCODE dbSUPER 4.4 -522.0 -521974 0.9 ZBTB20 LOC100130345 GC03M064399 PRICKLE2 GC03M064225
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130345 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130345 gene promoter:
  • AREB6
  • AP-1
  • HNF-1A
  • HNF-1
  • AML1a
  • N-Myc
  • Nkx3-1
  • Nkx3-1 v1

Genomic Locations for LOC100130345 Gene

Genomic Locations for LOC100130345 Gene
chr3:63,741,827-63,827,445
(GRCh38/hg38)
Size:
85,619 bases
Orientation:
Minus strand

Genomic View for LOC100130345 Gene

Genes around LOC100130345 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130345 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130345 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130345 Gene

Proteins for LOC100130345 Gene

Post-translational modifications for LOC100130345 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130345 Gene

Domains & Families for LOC100130345 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130345 Gene

Function for LOC100130345 Gene

Phenotypes From GWAS Catalog for LOC100130345 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130345 Gene

Localization for LOC100130345 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130345 Gene

Pathways & Interactions for LOC100130345 Gene

SuperPathways for LOC100130345 Gene

No Data Available

Interacting Proteins for LOC100130345 Gene

Gene Ontology (GO) - Biological Process for LOC100130345 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130345 Gene

Drugs & Compounds for LOC100130345 Gene

No Compound Related Data Available

Transcripts for LOC100130345 Gene

mRNA/cDNA for LOC100130345 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130345 Gene

No ASD Table

Relevant External Links for LOC100130345 Gene

GeneLoc Exon Structure for
LOC100130345

Expression for LOC100130345 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130345 Gene

mRNA expression in normal human tissues for LOC100130345 Gene
genes like me logo Genes that share expression patterns with LOC100130345: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130345 Gene

Orthologs for LOC100130345 Gene

Evolution for LOC100130345 Gene

ENSEMBL:
Gene Tree for LOC100130345 (if available)
TreeFam:
Gene Tree for LOC100130345 (if available)

No data available for Orthologs for LOC100130345 Gene

Paralogs for LOC100130345 Gene

No data available for Paralogs for LOC100130345 Gene

Variants for LOC100130345 Gene

Sequence variations from dbSNP and Humsavar for LOC100130345 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000037847 -- 63,750,368(-) T/C genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000207184 -- 63,779,517(-) A/T genic_upstream_transcript_variant, intron_variant
rs1000250570 -- 63,744,785(-) A/G genic_downstream_transcript_variant, intron_variant
rs1000261928 -- 63,754,162(-) A/ genic_downstream_transcript_variant, intron_variant, non_coding_transcript_variant
rs1000291921 -- 63,783,341(-) C/T genic_upstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130345 Gene

Disorders for LOC100130345 Gene

No disorders were found for LOC100130345 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130345 Gene

Publications for LOC100130345 Gene

No publications were found for LOC100130345 Gene.

Products for LOC100130345 Gene

Sources for LOC100130345 Gene

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