Aliases for LOC100130331 Gene

Aliases for LOC100130331 Gene

  • POTE Ankyrin Domain Family, Member F Pseudogene 3
  • Novel Transcript 5
  • AL359924.1 5

External Ids for LOC100130331 Gene

Previous GeneCards Identifiers for LOC100130331 Gene

  • GC01U901795
  • GC01P236092
  • GC01P238026

Summaries for LOC100130331 Gene

GeneCards Summary for LOC100130331 Gene

LOC100130331 (POTE Ankyrin Domain Family, Member F Pseudogene) is a Pseudogene.

Additional gene information for LOC100130331 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100130331 Gene

Genomics for LOC100130331 Gene

GeneHancer (GH) Regulatory Elements for LOC100130331 Gene

Promoters and enhancers for LOC100130331 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J237861 Enhancer 0.3 Ensembl 750.6 -0.1 -74 0.6 GABPA LOC100130331 ZP4 HSALNG0011812
GH01J237864 Enhancer 0.9 ENCODE 0.6 +2.3 2301 0.2 CTCF FOXA1 MLX RBPJ NR2F1 NR2F6 MIXL1 MYC L3MBTL2 MAX ZP4 LOC100130331
GH01J237872 Enhancer 1 Ensembl ENCODE 0.4 +11.5 11524 1.4 ZNF362 ZNF280D MAFK SP7 ZSCAN21 PRDM1 PRDM10 ZNF639 SMARCC1 ZEB2 LOC100130331 ZP4
GH01J237878 Enhancer 0.5 Ensembl ENCODE 0.4 +17.2 17202 0.9 JUND ZSCAN5C ZP4 LOC100130331
GH01J237868 Enhancer 0.3 Ensembl 0.4 +5.5 5526 0.2 EZH2 NANOG ZP4 LOC100130331
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130331 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130331 gene promoter:
  • Oct-B1
  • oct-B2
  • oct-B3
  • POU2F1
  • POU2F1a
  • POU2F2
  • POU2F2 (Oct-2.1)
  • POU2F2B
  • POU2F2C
  • SRY

Genomic Locations for LOC100130331 Gene

Genomic Locations for LOC100130331 Gene
chr1:237,862,175-237,928,321
(GRCh38/hg38)
Size:
66,147 bases
Orientation:
Plus strand
chr1:238,025,475-238,091,621
(GRCh37/hg19)
Size:
66,147 bases
Orientation:
Plus strand

Genomic View for LOC100130331 Gene

Genes around LOC100130331 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130331 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130331 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130331 Gene

Proteins for LOC100130331 Gene

Post-translational modifications for LOC100130331 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130331 Gene

Domains & Families for LOC100130331 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100130331 Gene

Function for LOC100130331 Gene

Phenotypes From GWAS Catalog for LOC100130331 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130331 Gene

Localization for LOC100130331 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130331 Gene

Pathways & Interactions for LOC100130331 Gene

PathCards logo

SuperPathways for LOC100130331 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100130331 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130331 Gene

Drugs & Compounds for LOC100130331 Gene

No Compound Related Data Available

Transcripts for LOC100130331 Gene

mRNA/cDNA for LOC100130331 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNACentral transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130331 Gene

No ASD Table

Relevant External Links for LOC100130331 Gene

GeneLoc Exon Structure for
LOC100130331

Expression for LOC100130331 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130331 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for LOC100130331 Gene



SOURCE GeneReport for Unigene cluster for LOC100130331 Gene:

Hs.661736
genes like me logo Genes that share expression patterns with LOC100130331: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130331 Gene

Orthologs for LOC100130331 Gene

Evolution for LOC100130331 Gene

ENSEMBL:
Gene Tree for LOC100130331 (if available)
TreeFam:
Gene Tree for LOC100130331 (if available)

No data available for Orthologs for LOC100130331 Gene

Paralogs for LOC100130331 Gene

No data available for Paralogs for LOC100130331 Gene

Variants for LOC100130331 Gene

Sequence variations from dbSNP and Humsavar for LOC100130331 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs193920872 uncertain-significance, Malignant tumor of prostate 237,890,138(+) C/A/T intron_variant
rs1000014676 -- 237,923,642(+) A/T intron_variant
rs1000030346 -- 237,927,842(+) A/T non_coding_transcript_variant
rs1000056763 -- 237,885,640(+) CAC/CACAC intron_variant
rs1000061804 -- 237,911,364(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130331 Gene

Variant ID Type Subtype PubMed ID
esv2671235 CNV deletion 23128226
esv2725729 CNV deletion 23290073
esv2759008 CNV gain 17122850
esv34468 CNV gain 17911159
esv3589241 CNV gain 21293372
esv3589242 CNV loss 21293372
esv3589243 CNV loss 21293372
nsv474288 CNV novel sequence insertion 20440878
nsv832993 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130331 Gene

Disorders for LOC100130331 Gene

No disorders were found for LOC100130331 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130331 Gene

Publications for LOC100130331 Gene

No publications were found for LOC100130331 Gene.

No data available for External Links for LOC100130331 Gene

Products for LOC100130331 Gene

Sources for LOC100130331 Gene