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Aliases for LOC100130298 Gene

Subcategory (RNA class) for LOC100130298 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100130298 Gene

  • HCG1816373-Like 3
  • AC022182.2 5

External Ids for LOC100130298 Gene

Previous GeneCards Identifiers for LOC100130298 Gene

  • GC08U900977
  • GC08M062041
  • GC08M061878

Summaries for LOC100130298 Gene

GeneCards Summary for LOC100130298 Gene

LOC100130298 (HCG1816373-Like) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130298 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130298 Gene

Genomics for LOC100130298 Gene

GeneHancer (GH) Regulatory Elements for LOC100130298 Gene

Promoters and enhancers for LOC100130298 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J060967 Promoter/Enhancer 1 Ensembl ENCODE 650.7 +0.1 69 1 CTCF POLR2A ZBED1 ZNF407 LOC100130298 CLVS1
GH08J061821 Enhancer 0.2 dbSUPER 5.2 -854.1 -854061 0.8 LOC100130298 LOC105375871 GC08P061797 LOC101929628
GH08J061003 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -36.6 -36626 1.2 HDAC1 PKNOX1 ZBTB40 E4F1 CTBP1 MTA3 PHF20 EGR1 POLR2A FOXK2 CHD7 CLVS1 GC08P061024 LOC100130298
GH08J060998 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.3 -31.6 -31612 2.4 PKNOX1 SMAD1 BMI1 BATF IRF4 RAD21 ATF7 ZNF548 ETV6 BCLAF1 CLVS1 CHD7 NPM1P6 GC08P061024 LOC100130298
GH08J060980 Enhancer 0.8 ENCODE 0.4 -13.3 -13305 1.5 HDAC1 ATF1 MAX BACH1 FOSL1 CTBP1 ZNF766 MTA3 ZNF316 NCOR1 CLVS1 LOC100130298 GC08P061024
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130298 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130298 gene promoter:
  • E2F-1
  • ATF
  • E2F
  • CHOP-10
  • E2F-2
  • E2F-3a

Genomic Locations for LOC100130298 Gene

Genomic Locations for LOC100130298 Gene
chr8:60,965,802-60,967,775
(GRCh38/hg38)
Size:
1,974 bases
Orientation:
Minus strand
chr8:61,878,361-61,880,334
(GRCh37/hg19)
Size:
1,974 bases
Orientation:
Minus strand

Genomic View for LOC100130298 Gene

Genes around LOC100130298 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130298 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130298 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130298 Gene

Proteins for LOC100130298 Gene

Post-translational modifications for LOC100130298 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130298 Gene

Domains & Families for LOC100130298 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130298 Gene

Function for LOC100130298 Gene

Phenotypes From GWAS Catalog for LOC100130298 Gene

Phenotypes for LOC100130298 Gene

genes like me logo Genes that share phenotypes with LOC100130298: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130298 Gene

Localization for LOC100130298 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130298 Gene

Pathways & Interactions for LOC100130298 Gene

SuperPathways for LOC100130298 Gene

No Data Available

Interacting Proteins for LOC100130298 Gene

Gene Ontology (GO) - Biological Process for LOC100130298 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130298 Gene

Drugs & Compounds for LOC100130298 Gene

No Compound Related Data Available

Transcripts for LOC100130298 Gene

mRNA/cDNA for LOC100130298 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100130298 Gene

HCG1816373-like:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130298 Gene

No ASD Table

Relevant External Links for LOC100130298 Gene

GeneLoc Exon Structure for
LOC100130298

Expression for LOC100130298 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130298 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130298 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x9.2), Brain - Cerebellum (x7.5), Brain - Spinal cord (cervical c-1) (x6.6), and Whole Blood (x5.6).

SOURCE GeneReport for Unigene cluster for LOC100130298 Gene:

Hs.636194
genes like me logo Genes that share expression patterns with LOC100130298: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130298 Gene

Orthologs for LOC100130298 Gene

Evolution for LOC100130298 Gene

ENSEMBL:
Gene Tree for LOC100130298 (if available)
TreeFam:
Gene Tree for LOC100130298 (if available)

No data available for Orthologs for LOC100130298 Gene

Paralogs for LOC100130298 Gene

No data available for Paralogs for LOC100130298 Gene

Variants for LOC100130298 Gene

Sequence variations from dbSNP and Humsavar for LOC100130298 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000788977 -- 60,967,476(-) C/T intron_variant
rs1001073431 -- 60,968,707(-) G/A upstream_transcript_variant
rs1003555570 -- 60,967,290(-) T/C intron_variant
rs1004501552 -- 60,966,599(-) C/G intron_variant
rs1004553802 -- 60,969,219(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130298 Gene

Variant ID Type Subtype PubMed ID
esv2764117 CNV loss 21179565

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130298 Gene

Disorders for LOC100130298 Gene

Additional Disease Information for LOC100130298

No disorders were found for LOC100130298 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130298 Gene

Publications for LOC100130298 Gene

  1. Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations. (PMID: 24529757) Xie T … Xu R (Neurobiology of aging 2014) 3 58

Products for LOC100130298 Gene

Sources for LOC100130298 Gene

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