Aliases for LOC100130268 Gene

Data sources for LOC100130268 Gene:

RNA type for LOC100130268 Gene

lncRNA

Aliases for LOC100130268 Gene

External Ids for LOC100130268 Gene

Previous GeneCards Identifiers for LOC100130268 Gene

  • GC12U900913
  • GC12P073915
  • GC12P075236

Summaries for LOC100130268 Gene

GeneCards Summary for LOC100130268 Gene

LOC100130268 (Uncharacterized LOC100130268) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130268 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100130268 Gene

Genomics for LOC100130268 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100130268 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J075236 Enhancer 0.6 ENCODE 250.7 +1.6 1556 0.2 ZNF217 MBD2 ELF1 CTBP1 GATA3 TCF7L2 SMARCE1 PKNOX1 FOXA1 DPF2 CAPS2-AS1 HSALNG0092479 LOC100130268 CCNG2P1 lnc-CAPS2-1 KCNC2 GLIPR1L1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100130268 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100130268 Gene

Latest Assembly
chr12:75,234,740-75,251,865
(GRCh38/hg38)
Size:
17,126 bases
Orientation:
Plus strand

Previous Assembly
chr12:75,628,520-75,645,645
(GRCh37/hg19 by Entrez Gene)
Size:
17,126 bases
Orientation:
Plus strand

Genomic View for LOC100130268 Gene

Genes around LOC100130268 on UCSC Golden Path with GeneCards custom track
LOC100130268 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100130268 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130268 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130268 Gene

Proteins for LOC100130268 Gene

Post-translational modifications for LOC100130268 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130268 Gene

Domains & Families for LOC100130268 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100130268 Gene

Function for LOC100130268 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130268 Gene

Localization for LOC100130268 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130268 Gene

Pathways & Interactions for LOC100130268 Gene

PathCards logo

SuperPathways for LOC100130268 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100130268 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100130268 Gene

Drugs & Compounds for LOC100130268 Gene

No Compound Related Data Available

Transcripts for LOC100130268 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100130268 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00002430F4_9606 lncRNA 1753 3

RefSeq: NR_149000,

LNCipedia: lnc-GLIPR1L1-1:3,

NONCODE: NONHSAT029523.2,

URS00008BBC3F_9606 lncRNA 2005 3

LncBook: HSALNT0191632,

LNCipedia: lnc-GLIPR1L1-1:7,

NONCODE: NONHSAT029520.2,

URS00008BFA39_9606 lncRNA 985 3

LncBook: HSALNT0191640,

LNCipedia: lnc-GLIPR1L1-1:5,

NONCODE: NONHSAT029525.2,

URS00008B8BC2_9606 lncRNA 585 3

LncBook: HSALNT0191633,

LNCipedia: lnc-GLIPR1L1-1:1,

NONCODE: NONHSAT029521.2,

URS00008BA2B7_9606 lncRNA 1134 2

LNCipedia: lnc-GLIPR1L1-1:2,

NONCODE: NONHSAT029522.2,

LOC100130268 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100130268 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130268 Gene

No ASD Table

Relevant External Links for LOC100130268 Gene

GeneLoc Exon Structure for
LOC100130268

Expression for LOC100130268 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130268 Gene

Orthologs for LOC100130268 Gene

No data available for Orthologs and Evolution for LOC100130268 Gene

Paralogs for LOC100130268 Gene

No data available for Paralogs for LOC100130268 Gene

Variants for LOC100130268 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100130268 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130268 Gene

Disorders for LOC100130268 Gene

No disorders were found for LOC100130268 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130268 Gene

Publications for LOC100130268 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LOC100130268 Gene

Products for LOC100130268 Gene

Sources for LOC100130268 Gene