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Aliases for LOC100130264 Gene

Subcategory (RNA class) for LOC100130264 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100130264 Gene

  • Uncharacterized LOC100130264 3
  • AL049647.1 5

External Ids for LOC100130264 Gene

Previous GeneCards Identifiers for LOC100130264 Gene

  • GC20U900327
  • GC20M019171

Summaries for LOC100130264 Gene

GeneCards Summary for LOC100130264 Gene

LOC100130264 (Uncharacterized LOC100130264) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130264 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130264 Gene

Genomics for LOC100130264 Gene

GeneHancer (GH) Regulatory Elements for LOC100130264 Gene

Promoters and enhancers for LOC100130264 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I019283 Enhancer 0.9 ENCODE dbSUPER 550.8 +0.1 108 1.3 NCOA3 NFIB NEUROD1 NFXL1 ZBTB7B ZBTB40 ZKSCAN1 E2F1 ZNF316 GATA3 LOC100130264 SLC24A3 GC20P019232
GH20I019285 Enhancer 0.2 dbSUPER 550.8 -1.7 -1663 0.6 LOC100130264 PIR35932 SLC24A3
GH20I019249 Enhancer 0.6 FANTOM5 11.3 +34.9 34939 0.4 CTCF RFX1 CREB1 MAX FOS MYC LOC100130264 SLC24A3 ENSG00000235996 GC20P019232
GH20I019262 Enhancer 0.4 dbSUPER 11.2 +21.5 21480 0.6 CTBP1 PRDM10 LOC100130264 ENSG00000235996 SLC24A3 GC20P019232
GH20I019308 Enhancer 0.3 Ensembl 11.7 -23.9 -23884 0.6 MYC LOC100130264 SLC24A3 PIR35932 PIR50417
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130264 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130264 gene promoter:

Genomic Locations for LOC100130264 Gene

Genomic Locations for LOC100130264 Gene
chr20:19,242,302-19,284,596
(GRCh38/hg38)
Size:
42,295 bases
Orientation:
Minus strand
chr20:19,222,946-19,265,240
(GRCh37/hg19)

Genomic View for LOC100130264 Gene

Genes around LOC100130264 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130264 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130264 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130264 Gene

Proteins for LOC100130264 Gene

Post-translational modifications for LOC100130264 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130264 Gene

Domains & Families for LOC100130264 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130264 Gene

Function for LOC100130264 Gene

Phenotypes From GWAS Catalog for LOC100130264 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130264 Gene

Localization for LOC100130264 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130264 Gene

Pathways & Interactions for LOC100130264 Gene

SuperPathways for LOC100130264 Gene

No Data Available

Interacting Proteins for LOC100130264 Gene

Gene Ontology (GO) - Biological Process for LOC100130264 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130264 Gene

Drugs & Compounds for LOC100130264 Gene

No Compound Related Data Available

Transcripts for LOC100130264 Gene

mRNA/cDNA for LOC100130264 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100130264 Gene

Uncharacterized LOC100130264:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130264 Gene

No ASD Table

Relevant External Links for LOC100130264 Gene

GeneLoc Exon Structure for
LOC100130264

Expression for LOC100130264 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130264 Gene

SOURCE GeneReport for Unigene cluster for LOC100130264 Gene:

Hs.683814
genes like me logo Genes that share expression patterns with LOC100130264: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130264 Gene

Orthologs for LOC100130264 Gene

Evolution for LOC100130264 Gene

ENSEMBL:
Gene Tree for LOC100130264 (if available)
TreeFam:
Gene Tree for LOC100130264 (if available)

No data available for Orthologs for LOC100130264 Gene

Paralogs for LOC100130264 Gene

No data available for Paralogs for LOC100130264 Gene

Variants for LOC100130264 Gene

Sequence variations from dbSNP and Humsavar for LOC100130264 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000034434 -- 19,267,673(-) C/G/T intron_variant
rs1000049637 -- 19,260,435(-) C/G intron_variant
rs1000101497 -- 19,260,723(-) G/C intron_variant
rs1000111205 -- 19,273,855(-) T/G intron_variant
rs1000140921 -- 19,273,508(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130264 Gene

Variant ID Type Subtype PubMed ID
esv2670085 CNV deletion 23128226
esv3645455 CNV loss 21293372
nsv1072527 CNV deletion 25765185
nsv1109356 CNV deletion 24896259
nsv585671 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130264 Gene

Disorders for LOC100130264 Gene

Additional Disease Information for LOC100130264

No disorders were found for LOC100130264 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130264 Gene

Publications for LOC100130264 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100130264 Gene

Sources for LOC100130264 Gene

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