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Aliases for LOC100130238 Gene

Subcategory (RNA class) for LOC100130238 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100130238 Gene

  • Uncharacterized LOC100130238 3

External Ids for LOC100130238 Gene

Previous GeneCards Identifiers for LOC100130238 Gene

  • GC12P131364
  • GC12P132852

Summaries for LOC100130238 Gene

GeneCards Summary for LOC100130238 Gene

LOC100130238 (Uncharacterized LOC100130238) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130238 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130238 Gene

Genomics for LOC100130238 Gene

GeneHancer (GH) Regulatory Elements for LOC100130238 Gene

Promoters and enhancers for LOC100130238 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I132274 Enhancer 0.9 Ensembl ENCODE 550.8 -0.1 -89 0.6 USF1 ZNF449 ZNF2 ZBTB48 NFYB FOS ZNF600 STAT1 RFX1 MAZ ENSG00000256943 GC12M132272 LOC100130238 ENSG00000256542 GALNT9
GH12I132273 Enhancer 0.6 FANTOM5 ENCODE 550.8 -1.6 -1601 1 CTCF ZNF623 ENSG00000256943 GC12M132272 LOC100130238 GALNT9 GC12M132266
GH12I132277 Enhancer 0.7 ENCODE 0.8 +3.8 3761 3.7 TFAP4 USF1 ZNF644 ZFHX2 NFYB CBFA2T2 FOS PRDM10 EGR2 TFE3 ENSG00000256542 ENSG00000278872 LOC100130238 ENSG00000256943 GALNT9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130238 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130238 gene promoter:

Genomic Locations for LOC100130238 Gene

Genomic Locations for LOC100130238 Gene
chr12:132,275,391-132,280,900
(GRCh38/hg38)
Size:
5,510 bases
Orientation:
Plus strand
chr12:132,851,977-132,857,486
(GRCh37/hg19)

Genomic View for LOC100130238 Gene

Genes around LOC100130238 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130238 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130238 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130238 Gene

Proteins for LOC100130238 Gene

Post-translational modifications for LOC100130238 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130238 Gene

Domains & Families for LOC100130238 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130238 Gene

Function for LOC100130238 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130238 Gene

Localization for LOC100130238 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130238 Gene

Pathways & Interactions for LOC100130238 Gene

SuperPathways for LOC100130238 Gene

No Data Available

Interacting Proteins for LOC100130238 Gene

Gene Ontology (GO) - Biological Process for LOC100130238 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130238 Gene

Drugs & Compounds for LOC100130238 Gene

No Compound Related Data Available

Transcripts for LOC100130238 Gene

mRNA/cDNA for LOC100130238 Gene

(2) Additional mRNA sequences :

Unigene Clusters for LOC100130238 Gene

Uncharacterized LOC100130238:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130238 Gene

No ASD Table

Relevant External Links for LOC100130238 Gene

GeneLoc Exon Structure for
LOC100130238

Expression for LOC100130238 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130238 Gene

SOURCE GeneReport for Unigene cluster for LOC100130238 Gene:

Hs.536338
genes like me logo Genes that share expression patterns with LOC100130238: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130238 Gene

Orthologs for LOC100130238 Gene

No data available for Orthologs and Evolution for LOC100130238 Gene

Paralogs for LOC100130238 Gene

No data available for Paralogs for LOC100130238 Gene

Variants for LOC100130238 Gene

Sequence variations from dbSNP and Humsavar for LOC100130238 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000006615 -- 132,273,680(+) G/A upstream_transcript_variant
rs1000062614 -- 132,278,381(+) G/A intron_variant
rs1000336789 -- 132,273,983(+) G/A upstream_transcript_variant
rs1001078474 -- 132,279,733(+) C/T non_coding_transcript_variant
rs1001179008 -- 132,273,420(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100130238 Gene

Variant ID Type Subtype PubMed ID
dgv103n21 CNV loss 19592680
esv2746936 CNV deletion 23290073
nsv1041402 CNV gain 25217958
nsv560966 CNV gain 21841781
nsv826563 CNV gain 20364138
nsv952512 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100130238 Gene

Disorders for LOC100130238 Gene

Additional Disease Information for LOC100130238

No disorders were found for LOC100130238 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130238 Gene

Publications for LOC100130238 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for LOC100130238 Gene

Sources for LOC100130238 Gene

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