Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100130207 Gene

Subcategory (RNA class) for LOC100130207 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100130207 Gene

  • Uncharacterized LOC100130207 3

External Ids for LOC100130207 Gene

Previous GeneCards Identifiers for LOC100130207 Gene

  • GC03U901028
  • GC03M003757

Summaries for LOC100130207 Gene

GeneCards Summary for LOC100130207 Gene

LOC100130207 (Uncharacterized LOC100130207) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130207 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130207 Gene

Genomics for LOC100130207 Gene

GeneHancer (GH) Regulatory Elements for LOC100130207 Gene

Promoters and enhancers for LOC100130207 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I003798 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 0.3 +27.1 27111 4.2 CTCF MXI1 USF1 ZNF449 SIN3A ZIC2 ZNF335 GLIS2 POLR2A EZH2 LRRN1 PIR40545 LOC100130207 SUMF1
GH03I003806 Enhancer 0.4 dbSUPER 0.3 +20.3 20277 0.8 BACH1 NFE2 LRRN1 PIR40545 LOC100130207 SUMF1
GH03I003738 Enhancer 0.3 ENCODE 0.2 +87.6 87622 1.7 SREBF1 LRRN1 SUMF1 LOC100130207 ENSG00000223727
GH03I003707 Enhancer 0.5 ENCODE 0.1 +119.2 119170 2.3 GATA3 FOXA2 HLF CUX1 ENSG00000223727 LRRN1 LOC100130207 SUMF1
GH03I003700 Enhancer 0.4 ENCODE 0.1 +126.9 126949 0.1 POLR2A RUNX3 ENSG00000223727 LRRN1 LOC100130207
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130207 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130207 gene promoter:

Genomic Locations for LOC100130207 Gene

Genomic Locations for LOC100130207 Gene
chr3:3,684,804-3,827,421
(GRCh38/hg38)
Size:
142,618 bases
Orientation:
Minus strand

Genomic View for LOC100130207 Gene

Genes around LOC100130207 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130207 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130207 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130207 Gene

Proteins for LOC100130207 Gene

Post-translational modifications for LOC100130207 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130207 Gene

Domains & Families for LOC100130207 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130207 Gene

Function for LOC100130207 Gene

Phenotypes From GWAS Catalog for LOC100130207 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130207 Gene

Localization for LOC100130207 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130207 Gene

Pathways & Interactions for LOC100130207 Gene

SuperPathways for LOC100130207 Gene

No Data Available

Interacting Proteins for LOC100130207 Gene

Gene Ontology (GO) - Biological Process for LOC100130207 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130207 Gene

Drugs & Compounds for LOC100130207 Gene

No Compound Related Data Available

Transcripts for LOC100130207 Gene

mRNA/cDNA for LOC100130207 Gene

(3) Additional mRNA sequences :

Unigene Clusters for LOC100130207 Gene

Uncharacterized LOC100130207:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130207 Gene

No ASD Table

Relevant External Links for LOC100130207 Gene

GeneLoc Exon Structure for
LOC100130207

Expression for LOC100130207 Gene

SOURCE GeneReport for Unigene cluster for LOC100130207 Gene:

Hs.665943
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130207 Gene

Orthologs for LOC100130207 Gene

No data available for Orthologs and Evolution for LOC100130207 Gene

Paralogs for LOC100130207 Gene

No data available for Paralogs for LOC100130207 Gene

Variants for LOC100130207 Gene

Sequence variations from dbSNP and Humsavar for LOC100130207 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000002300 -- 3,364,052(-) G/C genic_downstream_transcript_variant, intron_variant
rs1000002496 -- 3,814,464(-) G/A genic_upstream_transcript_variant, intron_variant
rs1000006964 -- 3,746,395(-) A/G intron_variant
rs1000009553 -- 3,276,457(-) G/C genic_downstream_transcript_variant, intron_variant
rs1000011120 -- 3,362,462(-) A/G genic_downstream_transcript_variant, intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130207 Gene

Disorders for LOC100130207 Gene

Additional Disease Information for LOC100130207

No disorders were found for LOC100130207 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130207 Gene

Publications for LOC100130207 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LOC100130207 Gene

Sources for LOC100130207 Gene

Content
Loading form....