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Aliases for LOC100130177 Gene

Subcategory (RNA class) for LOC100130177 Gene

lncRNA

Aliases for LOC100130177 Gene

  • Uracil DNA Glycosylase Pseudogene 3
  • AC025437.6 5

External Ids for LOC100130177 Gene

ORGUL Members for LOC100130177 Gene

Previous GeneCards Identifiers for LOC100130177 Gene

  • GC05U900811
  • GC05M157548
  • GC05M157615

Summaries for LOC100130177 Gene

GeneCards Summary for LOC100130177 Gene

LOC100130177 (Uracil DNA Glycosylase Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130177 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130177 Gene

Genomics for LOC100130177 Gene

GeneHancer (GH) Regulatory Elements for LOC100130177 Gene

Promoters and enhancers for LOC100130177 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J158194 Enhancer 0.6 FANTOM5 ENCODE 0.7 -4.8 -4797 1.3 POLR2A LOC100130177 ENSG00000253673 LOC105377678
GH05J158224 Enhancer 0.3 FANTOM5 0.3 -34.5 -34494 0.3 RXRA LOC105377678 LOC100130177
GH05J158195 Enhancer 0.2 ENCODE 0.4 -5.7 -5717 0.2 LOC100130177 ENSG00000253673 LOC105377678
GH05J158225 Enhancer 0.2 FANTOM5 0.3 -36.0 -36025 0.1 LOC105377678 ENSG00000253449 LOC100130177
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130177 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130177 Gene

Genomic Locations for LOC100130177 Gene
chr5:158,188,977-158,189,911
(GRCh38/hg38)
Size:
935 bases
Orientation:
Minus strand
chr5:157,615,985-157,616,919
(GRCh37/hg19)
Size:
935 bases
Orientation:
Minus strand

Genomic View for LOC100130177 Gene

Genes around LOC100130177 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130177 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130177 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130177 Gene

Proteins for LOC100130177 Gene

Post-translational modifications for LOC100130177 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130177 Gene

Domains & Families for LOC100130177 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130177 Gene

Function for LOC100130177 Gene

Phenotypes From GWAS Catalog for LOC100130177 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130177 Gene

Localization for LOC100130177 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130177 Gene

Pathways & Interactions for LOC100130177 Gene

SuperPathways for LOC100130177 Gene

No Data Available

Interacting Proteins for LOC100130177 Gene

Gene Ontology (GO) - Biological Process for LOC100130177 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130177 Gene

Drugs & Compounds for LOC100130177 Gene

No Compound Related Data Available

Transcripts for LOC100130177 Gene

mRNA/cDNA for LOC100130177 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130177 Gene

No ASD Table

Relevant External Links for LOC100130177 Gene

GeneLoc Exon Structure for
LOC100130177

Expression for LOC100130177 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130177 Gene

genes like me logo Genes that share expression patterns with LOC100130177: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130177 Gene

Orthologs for LOC100130177 Gene

Evolution for LOC100130177 Gene

ENSEMBL:
Gene Tree for LOC100130177 (if available)
TreeFam:
Gene Tree for LOC100130177 (if available)

No data available for Orthologs for LOC100130177 Gene

Paralogs for LOC100130177 Gene

No data available for Paralogs for LOC100130177 Gene

Variants for LOC100130177 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130177 Gene

Disorders for LOC100130177 Gene

No disorders were found for LOC100130177 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130177 Gene

Publications for LOC100130177 Gene

  1. Genome-wide association study of a heart failure related metabolomic profile among African Americans in the Atherosclerosis Risk in Communities (ARIC) study. (PMID: 23934736) Yu B … Boerwinkle E (Genetic epidemiology 2013) 3 58

Products for LOC100130177 Gene

Sources for LOC100130177 Gene

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