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Aliases for LOC100130172 Gene

Subcategory (RNA class) for LOC100130172 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100130172 Gene

  • Uncharacterized LOC100130172 3
  • AC113382.1 5

External Ids for LOC100130172 Gene

Previous GeneCards Identifiers for LOC100130172 Gene

  • GC05U900807
  • GC05P137395
  • GC05P137368

Summaries for LOC100130172 Gene

GeneCards Summary for LOC100130172 Gene

LOC100130172 (Uncharacterized LOC100130172) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130172 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130172 Gene

Genomics for LOC100130172 Gene

GeneHancer (GH) Regulatory Elements for LOC100130172 Gene

Promoters and enhancers for LOC100130172 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J138027 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 658.9 -1.5 -1476 6.8 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF213 ZNF207 LOC100130172 FAM13B BRD8 CDC23 HNRNPA0 RNU6-1148P NME5 WNT8A RNU6-888P KDM3B
GH05J138035 Enhancer 1.1 Ensembl ENCODE 0.7 +3.3 3323 1 PKNOX1 FOXA2 ARNT ARID4B ZNF2 YY1 ZNF121 ZNF143 ATF7 DEK RNU6-1148P WNT8A NME5 RNU6-888P ENSG00000250260 LOC100130172 FAM13B
GH05J137997 Enhancer 1.2 FANTOM5 ENCODE 0.3 -34.6 -34640 1.2 FOXA2 ARNT NFRKB BATF KLF5 IRF4 TCF12 POLR2B ZNF766 FOS RNU6-1148P MYOT FAM13B GC05P137994 GC05P137995 LOC100130172
GH05J137999 Enhancer 1.1 Ensembl ENCODE 0.3 -32.4 -32382 1.9 HDAC1 PKNOX1 ATF1 RARA ZNF766 EGR1 SCRT2 FOS ATF7 ZBTB11 RNU6-1148P MYOT FAM13B GC05P137995 GC05P137994 LOC100130172
GH05J138034 Enhancer 0.4 FANTOM5 0.7 +2.2 2162 0.2 ZNF362 ZNF384 NME5 RNU6-1148P WNT8A RNU6-888P FAM53C PKD2L2 FAM13B KDM3B ENSG00000250260 LOC100130172
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130172 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130172 gene promoter:
  • LCR-F1
  • FOXD3
  • AML1a
  • Gfi-1
  • Pax-2a
  • Pax-2
  • COMP1
  • E2F
  • E2F-1
  • Evi-1

Genomic Locations for LOC100130172 Gene

Genomic Locations for LOC100130172 Gene
chr5:138,032,774-138,037,266
(GRCh38/hg38)
Size:
4,493 bases
Orientation:
Plus strand
chr5:137,368,463-137,373,321
(GRCh37/hg19)
Size:
4,859 bases
Orientation:
Plus strand

Genomic View for LOC100130172 Gene

Genes around LOC100130172 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130172 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130172 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130172 Gene

Proteins for LOC100130172 Gene

Post-translational modifications for LOC100130172 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130172 Gene

Domains & Families for LOC100130172 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130172 Gene

Function for LOC100130172 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130172 Gene

Localization for LOC100130172 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130172 Gene

Pathways & Interactions for LOC100130172 Gene

SuperPathways for LOC100130172 Gene

No Data Available

Interacting Proteins for LOC100130172 Gene

Gene Ontology (GO) - Biological Process for LOC100130172 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130172 Gene

Drugs & Compounds for LOC100130172 Gene

No Compound Related Data Available

Transcripts for LOC100130172 Gene

mRNA/cDNA for LOC100130172 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Unigene Clusters for LOC100130172 Gene

Uncharacterized LOC100130172:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130172 Gene

No ASD Table

Relevant External Links for LOC100130172 Gene

GeneLoc Exon Structure for
LOC100130172

Expression for LOC100130172 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130172 Gene

mRNA expression in normal human tissues for LOC100130172 Gene

SOURCE GeneReport for Unigene cluster for LOC100130172 Gene:

Hs.616629
genes like me logo Genes that share expression patterns with LOC100130172: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130172 Gene

Orthologs for LOC100130172 Gene

Evolution for LOC100130172 Gene

ENSEMBL:
Gene Tree for LOC100130172 (if available)
TreeFam:
Gene Tree for LOC100130172 (if available)

No data available for Orthologs for LOC100130172 Gene

Paralogs for LOC100130172 Gene

No data available for Paralogs for LOC100130172 Gene

Variants for LOC100130172 Gene

Sequence variations from dbSNP and Humsavar for LOC100130172 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000699520 -- 138,036,318(+) C/G non_coding_transcript_variant
rs1001918279 -- 138,035,870(+) G/A intron_variant
rs1001990529 -- 138,035,325(+) A/G intron_variant
rs1002617333 -- 138,032,908(+) G/A non_coding_transcript_variant
rs1002737150 -- 138,031,114(+) G/A upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130172 Gene

Disorders for LOC100130172 Gene

Additional Disease Information for LOC100130172

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100130172 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130172 Gene

Publications for LOC100130172 Gene

  1. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert TA … Walter MJ (PloS one 2009) 3 44 58

Products for LOC100130172 Gene

Sources for LOC100130172 Gene

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