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Aliases for LOC100130170 Gene

Aliases for LOC100130170 Gene

  • Chromosome 12 Open Reading Frame 49 Pseudogene 3
  • AL049733.1 5

External Ids for LOC100130170 Gene

Previous GeneCards Identifiers for LOC100130170 Gene

  • GC0XU901006
  • GC0XP129608
  • GC0XP129780

Summaries for LOC100130170 Gene

GeneCards Summary for LOC100130170 Gene

LOC100130170 (Chromosome 12 Open Reading Frame 49 Pseudogene) is a Pseudogene.

Additional gene information for LOC100130170 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130170 Gene

Genomics for LOC100130170 Gene

GeneHancer (GH) Regulatory Elements for LOC100130170 Gene

Promoters and enhancers for LOC100130170 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ130594 Enhancer 0.9 ENCODE 0.2 -51.0 -50999 0.2 HDAC1 ATF1 TAF9B FEZF1 CHAMP1 TCF12 ZNF766 GATA2 ZSCAN5C SIRT6 ENOX2 ENSG00000271677 LOC100130170
GH0XJ130595 Enhancer 0.8 ENCODE 0.2 -50.8 -50779 0.2 TAF9B FEZF1 CHAMP1 ZNF766 ZSCAN5C SIRT6 ATF7 NCOA1 ZEB2 ZNF148 ENSG00000271677 LOC100130170
GH0XJ130626 Enhancer 0.2 ENCODE 0.4 -18.9 -18908 1.1 LOC100130170 ENSG00000271677 ENOX2
GH0XJ130566 Enhancer 0.4 ENCODE 0.2 -79.1 -79055 0.5 USF1 REST ENSG00000271677 LOC100130170
GH0XJ130606 Enhancer 0.2 ENCODE 0.3 -39.0 -38959 0.2 ENOX2 LOC100130170 ENSG00000271677
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130170 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130170 Gene

Genomic Locations for LOC100130170 Gene
chrX:130,645,601-130,646,526
(GRCh38/hg38)
Size:
926 bases
Orientation:
Plus strand
chrX:129,779,697-129,780,300
(GRCh37/hg19)
Size:
604 bases
Orientation:
Plus strand

Genomic View for LOC100130170 Gene

Genes around LOC100130170 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130170 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130170 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130170 Gene

Proteins for LOC100130170 Gene

Post-translational modifications for LOC100130170 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130170 Gene

Domains & Families for LOC100130170 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130170 Gene

Function for LOC100130170 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130170 Gene

Localization for LOC100130170 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130170 Gene

Pathways & Interactions for LOC100130170 Gene

SuperPathways for LOC100130170 Gene

No Data Available

Interacting Proteins for LOC100130170 Gene

Gene Ontology (GO) - Biological Process for LOC100130170 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130170 Gene

Drugs & Compounds for LOC100130170 Gene

No Compound Related Data Available

Transcripts for LOC100130170 Gene

mRNA/cDNA for LOC100130170 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130170 Gene

No ASD Table

Relevant External Links for LOC100130170 Gene

GeneLoc Exon Structure for
LOC100130170

Expression for LOC100130170 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130170 Gene

genes like me logo Genes that share expression patterns with LOC100130170: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130170 Gene

Orthologs for LOC100130170 Gene

Evolution for LOC100130170 Gene

ENSEMBL:
Gene Tree for LOC100130170 (if available)
TreeFam:
Gene Tree for LOC100130170 (if available)

No data available for Orthologs for LOC100130170 Gene

Paralogs for LOC100130170 Gene

No data available for Paralogs for LOC100130170 Gene

Variants for LOC100130170 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130170 Gene

Disorders for LOC100130170 Gene

No disorders were found for LOC100130170 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130170 Gene

Publications for LOC100130170 Gene

No publications were found for LOC100130170 Gene.

Products for LOC100130170 Gene

Sources for LOC100130170 Gene

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