Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100130121 Gene

Subcategory (RNA class) for LOC100130121 Gene

lncRNA

Aliases for LOC100130121 Gene

  • Solute Carrier Family 19 Member 3 Pseudogene 3
  • AC073324.1 5

External Ids for LOC100130121 Gene

ORGUL Members for LOC100130121 Gene

Previous GeneCards Identifiers for LOC100130121 Gene

  • GC07U902155
  • GC07P055279

Summaries for LOC100130121 Gene

GeneCards Summary for LOC100130121 Gene

LOC100130121 (Solute Carrier Family 19 Member 3 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130121 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130121 Gene

Genomics for LOC100130121 Gene

GeneHancer (GH) Regulatory Elements for LOC100130121 Gene

Promoters and enhancers for LOC100130121 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J055244 Enhancer 0.8 FANTOM5 ENCODE 662.6 +1.9 1899 4 JUND JUN CEBPB RCOR1 EP300 MAFK TCF7L2 LOC100130121 GC07P055243 ELDR PIR38213
GH07J055364 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.7 +121.9 121894 3.4 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 LANCL2 CALM1P2 LOC100130121 SUMF2 LOC100420540 CICP12 LOC101409255 CCNJP1 SEPT14P24 ENSG00000203462
GH07J055253 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE 11.3 +10.7 10731 2.3 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF48 GLIS2 ZNF207 ZNF143 ATF7 PIR38213 ELDR LOC100130121 SEC61G LOC100996654 EGFR GC07P055243
GH07J055250 Enhancer 0.6 ENCODE 0.4 +6.2 6186 0.1 CTCF STAT1 MAX ZNF384 RAD21 XRCC5 IKZF1 SMC3 EGFR-AS1 EGFR LOC100996654 SEC61G ELDR GC07P055243 PIR38213 LOC100130121
GH07J055249 Enhancer 0.4 ENCODE 0.4 +5.3 5316 0.1 ATF4 CEBPG NR2C2 EGFR-AS1 EGFR SEC61G LOC100996654 ELDR LOC100130121 PIR38213 GC07P055243
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130121 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130121 Gene

Genomic Locations for LOC100130121 Gene
chr7:55,244,247-55,245,681
(GRCh38/hg38)
Size:
1,435 bases
Orientation:
Plus strand
chr7:55,311,940-55,313,374
(GRCh37/hg19)
Size:
1,435 bases
Orientation:
Plus strand

Genomic View for LOC100130121 Gene

Genes around LOC100130121 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130121 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130121 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130121 Gene

Proteins for LOC100130121 Gene

Post-translational modifications for LOC100130121 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130121 Gene

Domains & Families for LOC100130121 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130121 Gene

Function for LOC100130121 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130121 Gene

Localization for LOC100130121 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130121 Gene

Pathways & Interactions for LOC100130121 Gene

SuperPathways for LOC100130121 Gene

No Data Available

Interacting Proteins for LOC100130121 Gene

Gene Ontology (GO) - Biological Process for LOC100130121 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130121 Gene

Drugs & Compounds for LOC100130121 Gene

No Compound Related Data Available

Transcripts for LOC100130121 Gene

mRNA/cDNA for LOC100130121 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130121 Gene

No ASD Table

Relevant External Links for LOC100130121 Gene

GeneLoc Exon Structure for
LOC100130121

Expression for LOC100130121 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130121 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130121 Gene

This gene is overexpressed in Testis (x43.3), Skin - Sun Exposed (Lower leg) (x5.0), and Adipose - Visceral (Omentum) (x4.7).
genes like me logo Genes that share expression patterns with LOC100130121: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130121 Gene

Orthologs for LOC100130121 Gene

Evolution for LOC100130121 Gene

ENSEMBL:
Gene Tree for LOC100130121 (if available)
TreeFam:
Gene Tree for LOC100130121 (if available)

No data available for Orthologs for LOC100130121 Gene

Paralogs for LOC100130121 Gene

No data available for Paralogs for LOC100130121 Gene

Variants for LOC100130121 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130121 Gene

Disorders for LOC100130121 Gene

No disorders were found for LOC100130121 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130121 Gene

Publications for LOC100130121 Gene

No publications were found for LOC100130121 Gene.

Products for LOC100130121 Gene

Sources for LOC100130121 Gene

Content
Loading form....