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Aliases for LOC100130111 Gene

Subcategory (RNA class) for LOC100130111 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100130111 Gene

  • Uncharacterized LOC100130111 3
  • AC022613.1 5

External Ids for LOC100130111 Gene

Previous GeneCards Identifiers for LOC100130111 Gene

  • GC15U900835
  • GC15P027715
  • GC15P029928
  • GC15P007632

Summaries for LOC100130111 Gene

GeneCards Summary for LOC100130111 Gene

LOC100130111 (Uncharacterized LOC100130111) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100130111 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130111 Gene

Genomics for LOC100130111 Gene

GeneHancer (GH) Regulatory Elements for LOC100130111 Gene

Promoters and enhancers for LOC100130111 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I029674 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 550.8 +0.1 148 2.1 KLF1 ZNF449 GTF2E2 ARID4B CHD4 SIN3A ZIC2 ZNF335 ZFHX2 GLIS2 LOC100130111 ENSG00000247728 LOC105370743
GH15I029669 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 -3.8 -3827 3.2 MEIS2 MXI1 FOXA2 PKNOX1 TAF1 MAX SIN3A RAD21 YY1 FOSL1 ENSG00000259814 LOC100130111 PIR43988
GH15I029676 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 +2.9 2928 2.5 GLIS1 SCRT2 ZFP36 ZIC2 ATF2 LOC100130111 LOC105370743
GH15I029656 Enhancer 1 FANTOM5 Ensembl ENCODE 0.4 -17.8 -17786 0.8 CTCF NFATC3 L3MBTL2 ASH1L SIN3A ZNF7 ZNF316 VEZF1 EMSY ENSG00000259814 WHAMMP2 LOC100130111 PIR43988
GH15I029668 Enhancer 0.8 ENCODE 0.4 -6.7 -6727 0.2 ELF3 ARNT ARID4B SIN3A ZNF2 RAD21 YY1 SCRT2 ZNF143 RCOR1 ENSG00000247728 ENSG00000270016 LOC100130111 PIR43988
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130111 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100130111 gene promoter:

Genomic Locations for LOC100130111 Gene

Genomic Locations for LOC100130111 Gene
chr15:29,674,989-29,681,183
(GRCh38/hg38)
Size:
6,195 bases
Orientation:
Plus strand
chr15:29,967,188-29,973,161
(GRCh37/hg19)

Genomic View for LOC100130111 Gene

Genes around LOC100130111 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130111 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130111 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130111 Gene

Proteins for LOC100130111 Gene

Post-translational modifications for LOC100130111 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130111 Gene

Domains & Families for LOC100130111 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130111 Gene

Function for LOC100130111 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130111 Gene

Localization for LOC100130111 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130111 Gene

Pathways & Interactions for LOC100130111 Gene

SuperPathways for LOC100130111 Gene

No Data Available

Interacting Proteins for LOC100130111 Gene

Gene Ontology (GO) - Biological Process for LOC100130111 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130111 Gene

Drugs & Compounds for LOC100130111 Gene

No Compound Related Data Available

Transcripts for LOC100130111 Gene

mRNA/cDNA for LOC100130111 Gene

(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100130111 Gene

Uncharacterized LOC100130111:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130111 Gene

No ASD Table

Relevant External Links for LOC100130111 Gene

GeneLoc Exon Structure for
LOC100130111

Expression for LOC100130111 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130111 Gene

mRNA expression in normal human tissues for LOC100130111 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130111 Gene

This gene is overexpressed in Pancreas (x11.4), Liver (x4.7), and Kidney - Cortex (x4.1).

SOURCE GeneReport for Unigene cluster for LOC100130111 Gene:

Hs.525720
genes like me logo Genes that share expression patterns with LOC100130111: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130111 Gene

Orthologs for LOC100130111 Gene

Evolution for LOC100130111 Gene

ENSEMBL:
Gene Tree for LOC100130111 (if available)
TreeFam:
Gene Tree for LOC100130111 (if available)

No data available for Orthologs for LOC100130111 Gene

Paralogs for LOC100130111 Gene

No data available for Paralogs for LOC100130111 Gene

Variants for LOC100130111 Gene

Sequence variations from dbSNP and Humsavar for LOC100130111 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000297075 -- 29,673,297(+) C/T upstream_transcript_variant
rs1000337016 -- 29,678,663(+) A/G non_coding_transcript_variant
rs1000352977 -- 29,673,614(+) G/A upstream_transcript_variant
rs1000388036 -- 29,678,415(+) C/G non_coding_transcript_variant
rs1000671844 -- 29,677,613(+) C/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130111 Gene

Disorders for LOC100130111 Gene

Additional Disease Information for LOC100130111

No disorders were found for LOC100130111 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130111 Gene

Publications for LOC100130111 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100130111 Gene

Sources for LOC100130111 Gene

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