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Aliases for LOC100130075 Gene

Subcategory (RNA class) for LOC100130075 Gene

lncRNA

Aliases for LOC100130075 Gene

  • SUZ RNA Binding Domain Containing 1 Pseudogene 3
  • AC025423.3 5

External Ids for LOC100130075 Gene

ORGUL Members for LOC100130075 Gene

Previous GeneCards Identifiers for LOC100130075 Gene

  • GC12U900990
  • GC12M067485
  • GC12M069198

Summaries for LOC100130075 Gene

GeneCards Summary for LOC100130075 Gene

LOC100130075 (SUZ RNA Binding Domain Containing 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130075 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130075 Gene

Genomics for LOC100130075 Gene

GeneHancer (GH) Regulatory Elements for LOC100130075 Gene

Promoters and enhancers for LOC100130075 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I068803 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE 557.8 -1.2 -1208 7 MLX FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 MDM2 LOC100130075 NUP107 CPSF6 RPL10P12 RAP1B KRT8P39 C1GALT1P1 SLC35E3 CPM
GH12I068832 Enhancer 0.5 ENCODE 17.6 -26.7 -26747 1 PAF1 RFX1 POLR2A CREB1 LOC100130075 MDM2 LINC02384 MDM1 ENSG00000256325 ENSG00000256664
GH12I068830 Enhancer 0.7 ENCODE 12.2 -24.9 -24902 0.2 SMARCA5 CTCF ZNF654 RFX1 TEAD1 SOX6 TRIM22 ZEB2 ELF1 RAD21 LOC100130075 MDM2 ENSG00000256325 ENSG00000256664
GH12I068783 Enhancer 1.4 FANTOM5 Ensembl ENCODE 5.9 +19.1 19071 5.2 FOXA2 SMAD1 ARID4B FEZF1 DMAP1 YY1 TCF12 SLC30A9 ATF7 RXRA MDM2 RAP1B CPM SLC35E3 LOC100130075 LOC105369820
GH12I068866 Enhancer 0.6 dbSUPER 10.3 -62.0 -61992 2 SCRT1 ZNF664 NFIC PRDM6 NFIB ZBTB48 SCRT2 ZIC2 RNU7-4P CPM MDM2 LOC100130075 IL26 ENSG00000257181
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130075 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130075 Gene

Genomic Locations for LOC100130075 Gene
chr12:68,804,437-68,805,494
(GRCh38/hg38)
Size:
1,058 bases
Orientation:
Minus strand
chr12:69,198,784-69,199,259
(GRCh37/hg19)

Genomic View for LOC100130075 Gene

Genes around LOC100130075 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130075 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130075 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130075 Gene

Proteins for LOC100130075 Gene

Post-translational modifications for LOC100130075 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130075 Gene

Domains & Families for LOC100130075 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130075 Gene

Function for LOC100130075 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130075 Gene

Localization for LOC100130075 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130075 Gene

Pathways & Interactions for LOC100130075 Gene

SuperPathways for LOC100130075 Gene

No Data Available

Interacting Proteins for LOC100130075 Gene

Gene Ontology (GO) - Biological Process for LOC100130075 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130075 Gene

Drugs & Compounds for LOC100130075 Gene

No Compound Related Data Available

Transcripts for LOC100130075 Gene

mRNA/cDNA for LOC100130075 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100130075 Gene

SUZ RNA binding domain containing 1 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130075 Gene

No ASD Table

Relevant External Links for LOC100130075 Gene

GeneLoc Exon Structure for
LOC100130075

Expression for LOC100130075 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130075 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130075 Gene

This gene is overexpressed in Liver (x21.3) and Testis (x10.2).

SOURCE GeneReport for Unigene cluster for LOC100130075 Gene:

Hs.744781
genes like me logo Genes that share expression patterns with LOC100130075: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130075 Gene

Orthologs for LOC100130075 Gene

Evolution for LOC100130075 Gene

ENSEMBL:
Gene Tree for LOC100130075 (if available)
TreeFam:
Gene Tree for LOC100130075 (if available)

No data available for Orthologs for LOC100130075 Gene

Paralogs for LOC100130075 Gene

No data available for Paralogs for LOC100130075 Gene

Variants for LOC100130075 Gene

Sequence variations from dbSNP and Humsavar for LOC100130075 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000569332 -- 68,804,228(-) C/T downstream_transcript_variant
rs1000982627 -- 68,804,616(-) C/G non_coding_transcript_variant
rs1001721115 -- 68,805,826(-) T/G upstream_transcript_variant
rs1001752260 -- 68,805,502(-) T/C upstream_transcript_variant
rs1002804398 -- 68,806,773(-) T/G upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130075 Gene

Disorders for LOC100130075 Gene

Additional Disease Information for LOC100130075

No disorders were found for LOC100130075 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100130075 Gene

Publications for LOC100130075 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LOC100130075 Gene

Sources for LOC100130075 Gene

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