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Aliases for LOC100130049 Gene

Aliases for LOC100130049 Gene

  • Ribosomal L1 Domain-Containing Protein 1-Like 3
  • AL353743.3 5

External Ids for LOC100130049 Gene

Previous GeneCards Identifiers for LOC100130049 Gene

  • GC09U900886
  • GC09P087740
  • GC09P088550

Summaries for LOC100130049 Gene

GeneCards Summary for LOC100130049 Gene

LOC100130049 (Ribosomal L1 Domain-Containing Protein 1-Like) is a Pseudogene.

Additional gene information for LOC100130049 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130049 Gene

Genomics for LOC100130049 Gene

GeneHancer (GH) Regulatory Elements for LOC100130049 Gene

Promoters and enhancers for LOC100130049 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J085740 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10 -192.4 -192446 3.7 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 IRF4 ZNF213 AGTPBP1 ENSG00000229454 LOC100287212 ENSG00000270688 RN7SKP264 LOC102724080 ENSG00000232211 LOC389765 LOC100130049 GC09M085748
GH09J086280 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10 +347.8 347784 2.8 HDGF PKNOX1 CLOCK ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ISCA1 GOLM1 C9orf153 RN7SKP264 ENSG00000270688 LOC102724080 LOC100287212 ENSG00000232211 ENSG00000229454 LOC494127
GH09J086731 Enhancer 1.3 Ensembl ENCODE dbSUPER 15.4 +797.9 797906 2.6 FEZF1 ZNF2 BRCA1 ZNF213 KLF7 FOS KLF13 SP3 YY2 ZNF662 GC09M086730 NAA35 GAS1RR LOC389765 LOC100130049 GAS1 LOC105376124
GH09J086741 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.1 +807.1 807053 1.2 NEUROD1 FEZF1 ZNF2 BRCA1 GLIS2 KLF7 ATF7 FOS KLF13 SP3 LOC100130049 DAPK1 GC09M086730 PIR61502
GH09J086793 Enhancer 0.7 Ensembl ENCODE 15.4 +861.2 861156 3.5 PRDM6 POLR2A RCOR1 CHD2 ZNF112 ZBTB17 LOC100130049 GAS1RR NAA35 GC09M086730 PIR61502
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130049 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130049 Gene

Genomic Locations for LOC100130049 Gene
chr9:85,934,575-85,936,599
(GRCh38/hg38)
Size:
2,025 bases
Orientation:
Plus strand
chr9:88,549,490-88,551,514
(GRCh37/hg19)
Size:
2,025 bases
Orientation:
Plus strand

Genomic View for LOC100130049 Gene

Genes around LOC100130049 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130049 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130049 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130049 Gene

Proteins for LOC100130049 Gene

Post-translational modifications for LOC100130049 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130049 Gene

Domains & Families for LOC100130049 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130049 Gene

Function for LOC100130049 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130049 Gene

Localization for LOC100130049 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130049 Gene

Pathways & Interactions for LOC100130049 Gene

SuperPathways for LOC100130049 Gene

No Data Available

Interacting Proteins for LOC100130049 Gene

Gene Ontology (GO) - Biological Process for LOC100130049 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130049 Gene

Drugs & Compounds for LOC100130049 Gene

No Compound Related Data Available

Transcripts for LOC100130049 Gene

mRNA/cDNA for LOC100130049 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130049 Gene

No ASD Table

Relevant External Links for LOC100130049 Gene

GeneLoc Exon Structure for
LOC100130049

Expression for LOC100130049 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130049 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100130049 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.3).
genes like me logo Genes that share expression patterns with LOC100130049: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130049 Gene

Orthologs for LOC100130049 Gene

Evolution for LOC100130049 Gene

ENSEMBL:
Gene Tree for LOC100130049 (if available)
TreeFam:
Gene Tree for LOC100130049 (if available)

No data available for Orthologs for LOC100130049 Gene

Paralogs for LOC100130049 Gene

No data available for Paralogs for LOC100130049 Gene

Variants for LOC100130049 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130049 Gene

Disorders for LOC100130049 Gene

No disorders were found for LOC100130049 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130049 Gene

Publications for LOC100130049 Gene

No publications were found for LOC100130049 Gene.

Products for LOC100130049 Gene

Sources for LOC100130049 Gene

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