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Aliases for LOC100130001 Gene

Subcategory (RNA class) for LOC100130001 Gene

lncRNA

Aliases for LOC100130001 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide B2 Pseudogene 3
  • AC114973.1 5

External Ids for LOC100130001 Gene

ORGUL Members for LOC100130001 Gene

Previous GeneCards Identifiers for LOC100130001 Gene

  • GC05U900803
  • GC05M056308

Summaries for LOC100130001 Gene

GeneCards Summary for LOC100130001 Gene

LOC100130001 (Small Nuclear Ribonucleoprotein Polypeptide B2 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100130001 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100130001 Gene

Genomics for LOC100130001 Gene

GeneHancer (GH) Regulatory Elements for LOC100130001 Gene

Promoters and enhancers for LOC100130001 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I057004 Enhancer 0.7 ENCODE 0.3 -28.8 -28801 0.8 FOXA2 JUN NEUROD1 CEBPG RARA HIC1 CTBP1 GATA3 FOS RCOR1 SETD9 GC05P057021 LOC100130001
GH05I056995 Enhancer 0.5 ENCODE 0.4 -19.7 -19681 1.3 BCOR CTCF ZNF143 SMC3 ZNF384 RAD21 LOC100130001 GC05P057021
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100130001 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100130001 Gene

Genomic Locations for LOC100130001 Gene
chr5:56,975,593-56,976,224
(GRCh38/hg38)
Size:
632 bases
Orientation:
Minus strand
chr5:56,271,420-56,272,051
(GRCh37/hg19)

Genomic View for LOC100130001 Gene

Genes around LOC100130001 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100130001 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100130001 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100130001 Gene

Proteins for LOC100130001 Gene

Post-translational modifications for LOC100130001 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100130001 Gene

Domains & Families for LOC100130001 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100130001 Gene

Function for LOC100130001 Gene

Phenotypes From GWAS Catalog for LOC100130001 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100130001 Gene

Localization for LOC100130001 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100130001 Gene

Pathways & Interactions for LOC100130001 Gene

SuperPathways for LOC100130001 Gene

No Data Available

Interacting Proteins for LOC100130001 Gene

Gene Ontology (GO) - Biological Process for LOC100130001 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100130001 Gene

Drugs & Compounds for LOC100130001 Gene

No Compound Related Data Available

Transcripts for LOC100130001 Gene

mRNA/cDNA for LOC100130001 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100130001 Gene

No ASD Table

Relevant External Links for LOC100130001 Gene

GeneLoc Exon Structure for
LOC100130001

Expression for LOC100130001 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100130001 Gene

genes like me logo Genes that share expression patterns with LOC100130001: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100130001 Gene

Orthologs for LOC100130001 Gene

Evolution for LOC100130001 Gene

ENSEMBL:
Gene Tree for LOC100130001 (if available)
TreeFam:
Gene Tree for LOC100130001 (if available)

No data available for Orthologs for LOC100130001 Gene

Paralogs for LOC100130001 Gene

No data available for Paralogs for LOC100130001 Gene

Variants for LOC100130001 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100130001 Gene

Disorders for LOC100130001 Gene

No disorders were found for LOC100130001 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100130001 Gene

Publications for LOC100130001 Gene

No publications were found for LOC100130001 Gene.

Products for LOC100130001 Gene

Sources for LOC100130001 Gene

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