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Aliases for LOC100129996 Gene

Subcategory (RNA class) for LOC100129996 Gene

lncRNA

Aliases for LOC100129996 Gene

  • Chromosome 6 Open Reading Frame 203 Pseudogene 3
  • AL357075.1 5

External Ids for LOC100129996 Gene

ORGUL Members for LOC100129996 Gene

Previous GeneCards Identifiers for LOC100129996 Gene

  • GC06U901294
  • GC06P154913
  • GC06P154864

Summaries for LOC100129996 Gene

GeneCards Summary for LOC100129996 Gene

LOC100129996 (Chromosome 6 Open Reading Frame 203 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129996 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129996 Gene

Genomics for LOC100129996 Gene

GeneHancer (GH) Regulatory Elements for LOC100129996 Gene

Promoters and enhancers for LOC100129996 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J154547 Enhancer 1.3 Ensembl ENCODE dbSUPER 650.7 -1.0 -1010 1 PKNOX1 ZSCAN4 INSM2 KLF17 MZF1 FEZF1 ZNF2 ZNF121 ZNF213 ZNF366 LOC100129996 SCAF8 CNKSR3 IPCEF1 ENSG00000275419
GH06J154553 Enhancer 1.1 ENCODE dbSUPER 0.4 +5.6 5555 2.1 ARNT INSM2 KLF17 MZF1 FEZF1 ZNF2 RFX5 ZEB1 ZNF335 ZNF121 CNKSR3 LOC100129996 RPS4XP8
GH06J154567 Enhancer 0.6 dbSUPER 0.4 +18.1 18051 1 ZNF174 ATF2 OSR2 MITF PRDM6 ZNF366 BCL6B ZSCAN5C ZNF350 WT1 CNKSR3 SCAF8 RPS4XP8 LOC100129996
GH06J154569 Enhancer 0.8 ENCODE dbSUPER 0.3 +20.4 20353 1.3 RXRA ZSCAN4 MAX ZNF398 REST SP1 GATA3 JUND ATF3 POLR2A CNKSR3 RPS4XP8 LOC100129996
GH06J154542 Enhancer 0.5 ENCODE 0.4 -6.5 -6526 0.2 SP1 PRDM6 NANOG POU5F1 CTBP2 ENSG00000275419 LOC100129996
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129996 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129996 Gene

Genomic Locations for LOC100129996 Gene
chr6:154,549,488-154,550,249
(GRCh38/hg38)
Size:
762 bases
Orientation:
Plus strand
chr6:154,870,622-154,871,383
(GRCh37/hg19)
Size:
762 bases
Orientation:
Plus strand

Genomic View for LOC100129996 Gene

Genes around LOC100129996 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129996 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129996 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129996 Gene

Proteins for LOC100129996 Gene

Post-translational modifications for LOC100129996 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129996 Gene

Domains & Families for LOC100129996 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129996 Gene

Function for LOC100129996 Gene

Phenotypes From GWAS Catalog for LOC100129996 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129996 Gene

Localization for LOC100129996 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129996 Gene

Pathways & Interactions for LOC100129996 Gene

SuperPathways for LOC100129996 Gene

No Data Available

Interacting Proteins for LOC100129996 Gene

Gene Ontology (GO) - Biological Process for LOC100129996 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129996 Gene

Drugs & Compounds for LOC100129996 Gene

No Compound Related Data Available

Transcripts for LOC100129996 Gene

mRNA/cDNA for LOC100129996 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129996 Gene

No ASD Table

Relevant External Links for LOC100129996 Gene

GeneLoc Exon Structure for
LOC100129996

Expression for LOC100129996 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129996 Gene

genes like me logo Genes that share expression patterns with LOC100129996: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129996 Gene

Orthologs for LOC100129996 Gene

Evolution for LOC100129996 Gene

ENSEMBL:
Gene Tree for LOC100129996 (if available)
TreeFam:
Gene Tree for LOC100129996 (if available)

No data available for Orthologs for LOC100129996 Gene

Paralogs for LOC100129996 Gene

No data available for Paralogs for LOC100129996 Gene

Variants for LOC100129996 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129996 Gene

Disorders for LOC100129996 Gene

No disorders were found for LOC100129996 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129996 Gene

Publications for LOC100129996 Gene

No publications were found for LOC100129996 Gene.

Products for LOC100129996 Gene

Sources for LOC100129996 Gene

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