Aliases for LOC100129948 Gene

Aliases for LOC100129948 Gene

  • Riboflavin Kinase Pseudogene 3

External Ids for LOC100129948 Gene

Previous GeneCards Identifiers for LOC100129948 Gene

  • GC01U902019
  • GC01P210888
  • GC01P212821

Summaries for LOC100129948 Gene

GeneCards Summary for LOC100129948 Gene

LOC100129948 (Riboflavin Kinase Pseudogene) is a Pseudogene.

Additional gene information for LOC100129948 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129948 Gene

Genomics for LOC100129948 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129948 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212644 Enhancer 1 Ensembl ENCODE dbSUPER 600.7 -1.7 -1673 3.2 SCRT2 NRF1 MGA NFE2 ZNF316 FOXA2 NR2C2 SCRT1 MAFG CEBPG ENSG00000226036 LOC100129948 lnc-FAM71A-2 BATF3 ANGEL2 ENSG00000235862 LINC02773 FAM71A
GH01J212634 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 -9.9 -9901 5.7 PRDM10 ZNF629 ZNF512 LEF1 ZNF692 JUND PRDM1 RELA ZNF24 MTA1 ATF3 BATF3 RPS6KC1 FLVCR1-DT TATDN3 PPP2R5A VASH2 LOC100129948 FAM71A ENSG00000235862
GH01J212629 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -17.0 -16973 2.6 CTCF JUND FOXA1 PRDM1 ZNF143 ZIC2 REST RAD21 SP1 TRIM22 TATDN3 ANGEL2 ENSG00000235862 FAM71A LOC100129948 LINC02773 BATF3
GH01J212633 Enhancer 0.5 Ensembl 0.4 -13.7 -13673 0.8 NFRKB EP400 VEZF1 L3MBTL2 NR4A1 ZNF680 BATF3 ENSG00000235862 FAM71A LOC100129948 LINC02773
GH01J212631 Enhancer 0.5 dbSUPER 0.4 -14.7 -14721 1.1 ZNF512 NFRKB EP400 VEZF1 L3MBTL2 NR4A1 FLVCR1 ENSG00000235862 FAM71A LOC100129948 LINC02773 BATF3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129948 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100129948 Gene

Genomic Locations for LOC100129948 Gene
chr1:212,647,274-212,650,319
(GRCh38/hg38)
Size:
3,046 bases
Orientation:
Plus strand
chr1:212,820,612-212,823,668
(GRCh37/hg19)
Size:
3,057 bases
Orientation:
Plus strand

Genomic View for LOC100129948 Gene

Genes around LOC100129948 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129948 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129948 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129948 Gene

Proteins for LOC100129948 Gene

Post-translational modifications for LOC100129948 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129948 Gene

Domains & Families for LOC100129948 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129948 Gene

Function for LOC100129948 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129948 Gene

Localization for LOC100129948 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129948 Gene

Pathways & Interactions for LOC100129948 Gene

PathCards logo

SuperPathways for LOC100129948 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129948 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129948 Gene

Drugs & Compounds for LOC100129948 Gene

No Compound Related Data Available

Transcripts for LOC100129948 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129948 Gene

No ASD Table

Relevant External Links for LOC100129948 Gene

GeneLoc Exon Structure for
LOC100129948

No data available for mRNA/cDNA for LOC100129948 Gene

Expression for LOC100129948 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129948 Gene

genes like me logo Genes that share expression patterns with LOC100129948: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129948 Gene

Orthologs for LOC100129948 Gene

No data available for Orthologs and Evolution for LOC100129948 Gene

Paralogs for LOC100129948 Gene

No data available for Paralogs for LOC100129948 Gene

Variants for LOC100129948 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129948 Gene

Disorders for LOC100129948 Gene

No disorders were found for LOC100129948 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129948 Gene

Publications for LOC100129948 Gene

No publications were found for LOC100129948 Gene.

No data available for Mastermind for LOC100129948 Gene

Products for LOC100129948 Gene

Sources for LOC100129948 Gene