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Aliases for LOC100129931 Gene

Subcategory (RNA class) for LOC100129931 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100129931 Gene

  • Uncharacterized LOC100129931 3
  • AC097382.2 5

External Ids for LOC100129931 Gene

Previous GeneCards Identifiers for LOC100129931 Gene

  • GC04U900844
  • GC04M007086

Summaries for LOC100129931 Gene

GeneCards Summary for LOC100129931 Gene

LOC100129931 (Uncharacterized LOC100129931) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129931 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129931 Gene

Genomics for LOC100129931 Gene

GeneHancer (GH) Regulatory Elements for LOC100129931 Gene

Promoters and enhancers for LOC100129931 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I007045 Enhancer 0.5 ENCODE 550.8 -0.3 -326 1.3 NR2F1 SCRT2 EBF1 IRF4 RUNX3 LOC100129931 TADA2B PIR50468 GC04P007056
GH04I007041 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 0.8 +2.8 2751 3.5 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A GLI4 ZNF48 YY1 GLIS2 TADA2B CCDC96 GRPEL1 LOC100129931
GH04I007049 Enhancer 0.6 ENCODE 0.8 -4.4 -4448 1.7 MNT REST ZFHX2 GLIS2 EGR1 SCRT2 ZBTB33 HNF4A EGR2 GRPEL1 TADA2B LOC100129931 PIR50468 GC04P007056
GH04I007033 Enhancer 1.1 Ensembl ENCODE 0.4 +11.7 11663 1.6 ELF3 FOXA2 ARID4B SIN3A DMAP1 BMI1 ZNF48 RAD21 RARA YY1 GC04M007026 GC04M007027 TBC1D14 GC04M007041 PIR35137 LOC100129931
GH04I007031 Enhancer 0.9 ENCODE 0.4 +14.2 14155 1.4 HDAC1 PKNOX1 ATF1 RB1 ARNT ZBTB40 TCF12 ATF7 CREM NCOA1 GC04M007026 GC04M007027 PIR40495 PIR57817 TBC1D14 LOC100129931
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129931 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129931 Gene

Genomic Locations for LOC100129931 Gene
chr4:7,030,554-7,046,231
(GRCh38/hg38)
Size:
15,678 bases
Orientation:
Minus strand
chr4:7,032,281-7,047,958
(GRCh37/hg19)

Genomic View for LOC100129931 Gene

Genes around LOC100129931 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129931 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129931 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129931 Gene

Proteins for LOC100129931 Gene

Post-translational modifications for LOC100129931 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129931 Gene

Domains & Families for LOC100129931 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129931 Gene

Function for LOC100129931 Gene

Phenotypes From GWAS Catalog for LOC100129931 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129931 Gene

Localization for LOC100129931 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129931 Gene

Pathways & Interactions for LOC100129931 Gene

SuperPathways for LOC100129931 Gene

No Data Available

Interacting Proteins for LOC100129931 Gene

Gene Ontology (GO) - Biological Process for LOC100129931 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129931 Gene

Drugs & Compounds for LOC100129931 Gene

No Compound Related Data Available

Transcripts for LOC100129931 Gene

mRNA/cDNA for LOC100129931 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129931 Gene

Uncharacterized LOC100129931:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129931 Gene

No ASD Table

Relevant External Links for LOC100129931 Gene

GeneLoc Exon Structure for
LOC100129931

Expression for LOC100129931 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129931 Gene

SOURCE GeneReport for Unigene cluster for LOC100129931 Gene:

Hs.707753
genes like me logo Genes that share expression patterns with LOC100129931: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129931 Gene

Orthologs for LOC100129931 Gene

Evolution for LOC100129931 Gene

ENSEMBL:
Gene Tree for LOC100129931 (if available)
TreeFam:
Gene Tree for LOC100129931 (if available)

No data available for Orthologs for LOC100129931 Gene

Paralogs for LOC100129931 Gene

No data available for Paralogs for LOC100129931 Gene

Variants for LOC100129931 Gene

Sequence variations from dbSNP and Humsavar for LOC100129931 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000019212 -- 7,040,909(-) C/T intron_variant
rs1000044008 -- 7,040,163(-) G/A intron_variant
rs1000119360 -- 7,030,239(-) T/A downstream_transcript_variant
rs1000126647 -- 7,036,691(-) G/A/T intron_variant
rs1000346404 -- 7,042,451(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129931 Gene

Variant ID Type Subtype PubMed ID
dgv8941n54 CNV gain 21841781
esv26516 CNV loss 19812545
esv2759221 CNV gain 17122850
esv34033 CNV loss 18971310
esv34196 OTHER inversion 12058347
nsv4217 CNV deletion 18451855
nsv428436 CNV gain 18775914
nsv469847 CNV gain 16826518
nsv593548 CNV loss 21841781
nsv593549 CNV gain+loss 21841781
nsv593550 CNV gain 21841781
nsv593556 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129931 Gene

Disorders for LOC100129931 Gene

Additional Disease Information for LOC100129931

No disorders were found for LOC100129931 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129931 Gene

Publications for LOC100129931 Gene

No publications were found for LOC100129931 Gene.

Products for LOC100129931 Gene

Sources for LOC100129931 Gene

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