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Aliases for LOC100129917 Gene

Subcategory (RNA class) for LOC100129917 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129917 Gene

  • Uncharacterized LOC100129917 3
  • AC139887.2 5

External Ids for LOC100129917 Gene

Previous GeneCards Identifiers for LOC100129917 Gene

  • GC04U900875
  • GC04M000765
  • GC04M000756

Summaries for LOC100129917 Gene

GeneCards Summary for LOC100129917 Gene

LOC100129917 (Uncharacterized LOC100129917) is an RNA Gene, and is affiliated with the ncRNA class. Diseases associated with LOC100129917 include Lung Cancer.

Additional gene information for LOC100129917 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129917 Gene

Genomics for LOC100129917 Gene

GeneHancer (GH) Regulatory Elements for LOC100129917 Gene

Promoters and enhancers for LOC100129917 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J000780 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 650.7 -0.3 -285 3.6 HDGF PKNOX1 SMAD1 FOXA2 ARID4B SIN3A DMAP1 YY1 POLR2B FOS LOC100129917 SLC49A3 PCGF3 CRIPAK CPLX1 LOC105374339
GH04J000704 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 15.7 +75.6 75594 2.6 HDGF PKNOX1 CLOCK SMAD1 ARNT SIN3A YBX1 ZNF2 POLR2B ZNF207 PCGF3 CRIPAK PIGG ENSG00000281016 LOC100129917 ZNF718 ENSG00000207009 ZNF141 ENSG00000272588 PDE6B
GH04J000050 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.5 +728.2 728190 6.1 PKNOX1 CBX3 ZSCAN4 SIN3A IRF4 YY1 ETS1 ZNF335 ZNF350 ZNF143 ZNF595 PIGG PCGF3 ZNF718 ZNF141 GAK ENSG00000272588 LOC100129917 IDUA GC04P000106
GH04J000929 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.4 -149.8 -149780 3.5 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 YY1 POLR2B E2F8 ZNF207 ZNF143 GAK TMEM175 PCGF3 DGKQ CRIPAK PIGG MAEA ZNF141 ZNF718 ENSG00000281016
GH04J001710 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 11.3 -931.6 -931574 5.7 HDGF PKNOX1 CLOCK SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ENSG00000270195 SLBP RNF4 HAUS3 NELFA FAM193A FAM53A GAK CRIPAK MAEA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129917 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129917 gene promoter:
  • Spz1
  • deltaCREB
  • CREB
  • SREBP-1c
  • SREBP-1b
  • SREBP-1a
  • NF-1
  • NF-1/L
  • Roaz
  • Chx10

Genomic Locations for LOC100129917 Gene

Genomic Locations for LOC100129917 Gene
chr4:762,387-781,849
(GRCh38/hg38)
Size:
19,463 bases
Orientation:
Minus strand
chr4:756,175-775,637
(GRCh37/hg19)
Size:
19,463 bases
Orientation:
Minus strand

Genomic View for LOC100129917 Gene

Genes around LOC100129917 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129917 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129917 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129917 Gene

Proteins for LOC100129917 Gene

Post-translational modifications for LOC100129917 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129917 Gene

Domains & Families for LOC100129917 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129917 Gene

Function for LOC100129917 Gene

Phenotypes From GWAS Catalog for LOC100129917 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129917 Gene

Localization for LOC100129917 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129917 Gene

Pathways & Interactions for LOC100129917 Gene

SuperPathways for LOC100129917 Gene

No Data Available

Interacting Proteins for LOC100129917 Gene

Gene Ontology (GO) - Biological Process for LOC100129917 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129917 Gene

Drugs & Compounds for LOC100129917 Gene

No Compound Related Data Available

Transcripts for LOC100129917 Gene

mRNA/cDNA for LOC100129917 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Unigene Clusters for LOC100129917 Gene

Uncharacterized LOC100129917:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129917 Gene

No ASD Table

Relevant External Links for LOC100129917 Gene

GeneLoc Exon Structure for
LOC100129917

Expression for LOC100129917 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129917 Gene

SOURCE GeneReport for Unigene cluster for LOC100129917 Gene:

Hs.731755
genes like me logo Genes that share expression patterns with LOC100129917: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129917 Gene

Orthologs for LOC100129917 Gene

Evolution for LOC100129917 Gene

ENSEMBL:
Gene Tree for LOC100129917 (if available)
TreeFam:
Gene Tree for LOC100129917 (if available)

No data available for Orthologs for LOC100129917 Gene

Paralogs for LOC100129917 Gene

No data available for Paralogs for LOC100129917 Gene

Variants for LOC100129917 Gene

Sequence variations from dbSNP and Humsavar for LOC100129917 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000569458 -- 780,731(-) T/C intron_variant, non_coding_transcript_variant
rs1000898461 -- 780,931(-) C/A/G intron_variant, non_coding_transcript_variant
rs1001308583 -- 783,088(-) C/G upstream_transcript_variant
rs1001464072 -- 781,614(-) C/A intron_variant, non_coding_transcript_variant
rs1001479443 -- 782,854(-) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129917 Gene

Variant ID Type Subtype PubMed ID
nsv950325 CNV deletion 24416366
nsv829834 CNV loss 17160897
nsv822425 CNV loss 20364138
nsv818207 CNV gain 17921354
nsv526780 CNV loss 19592680
nsv521402 CNV loss 19592680
nsv520136 CNV gain 19592680
nsv515844 CNV loss 19592680
nsv1003219 CNV gain 25217958
esv3599381 CNV gain 21293372
esv2759217 CNV loss 17122850

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129917 Gene

Disorders for LOC100129917 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LOC100129917 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
lung cancer
  • lung cancer, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LOC100129917

genes like me logo Genes that share disorders with LOC100129917: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LOC100129917 Gene

Publications for LOC100129917 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100129917 Gene

Sources for LOC100129917 Gene

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