Aliases for LOC100129878 Gene

Subcategory (RNA class) for LOC100129878 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LOC100129878 Gene

  • Uncharacterized LOC100129878 3
  • Novel Transcript, Antisense To DYM 5
  • NONHSAG023827.2 91
  • NONHSAG023828.2 91
  • HSALNG0121468 164
  • AC016866.1 5
  • Lnc-CTIF-1 165

External Ids for LOC100129878 Gene

Previous GeneCards Identifiers for LOC100129878 Gene

  • GC18U900406
  • GC18P044804
  • GC18P046550

Summaries for LOC100129878 Gene

GeneCards Summary for LOC100129878 Gene

LOC100129878 (Uncharacterized LOC100129878) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129878 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129878 Gene

Genomics for LOC100129878 Gene

GeneHancer (GH) Regulatory Elements Pubs


GeneHancers around LOC100129878 on the GeneHancer Hub at the UCSC Golden Path

Top Transcription factor binding sites by QIAGEN in the LOC100129878 gene promoter:
  • AREB6
  • CP2
  • Hlf
  • Lmo2
  • LyF-1
  • NF-E2
  • NF-E2 p45
  • Pax-4a
  • STAT3
  • STAT5A

Genomic Locations for LOC100129878 Gene

Genomic Locations for LOC100129878 Gene
chr18:49,021,519-49,048,959
(GRCh38/hg38)
Size:
27,441 bases
Orientation:
Plus strand

Genomic View for LOC100129878 Gene

Genes around LOC100129878 on UCSC Golden Path with GeneCards custom track
LOC100129878 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100129878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129878 Gene

Proteins for LOC100129878 Gene

Post-translational modifications for LOC100129878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129878 Gene

Domains & Families for LOC100129878 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129878 Gene

Function for LOC100129878 Gene

Phenotypes From GWAS Catalog for LOC100129878 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129878 Gene

Localization for LOC100129878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129878 Gene

Pathways & Interactions for LOC100129878 Gene

PathCards logo

SuperPathways for LOC100129878 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129878 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129878 Gene

Drugs & Compounds for LOC100129878 Gene

No Compound Related Data Available

Transcripts for LOC100129878 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129878 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005F3568_9606 lncRNA 659 5

RefSeq: NR_148999,

Ensembl: ENST00000584252 (view in UCSC) ,

LncBook: HSALNT0251105,

LNCipedia: lnc-CTIF-1:1,

NONCODE: NONHSAT059210.2,

URS0000D5E269_9606 lncRNA 750 2

LncBook: HSALNT0251102,

LNCipedia: lnc-CTIF-1:3,

URS00008BCADC_9606 lncRNA 636 2

LNCipedia: lnc-CTIF-1:2,

NONCODE: NONHSAT059209.2,

URS0000D57057_9606 lncRNA 568 2

LncBook: HSALNT0251104,

LNCipedia: lnc-CTIF-1:5,

URS00009B4974_9606 lncRNA 215 2

LncBook: HSALNT0251100,

NONCODE: NONHSAT177788.1,

LOC100129878 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100129878 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129878 Gene

No ASD Table

Relevant External Links for LOC100129878 Gene

GeneLoc Exon Structure for
LOC100129878

Expression for LOC100129878 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129878 Gene

Orthologs for LOC100129878 Gene

Evolution for LOC100129878 Gene

ENSEMBL:
Gene Tree for LOC100129878 (if available)
TreeFam:
Gene Tree for LOC100129878 (if available)

No data available for Orthologs for LOC100129878 Gene

Paralogs for LOC100129878 Gene

No data available for Paralogs for LOC100129878 Gene

Variants for LOC100129878 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LOC100129878 Gene

SNP ID Clinical significance and condition Chr 18 pos Variation AA Info Type
870744 Pathogenic: not provided 49,044,122(+) TAGACA/T FRAMESHIFT_VARIANT,THREE_PRIME_UTR_VARIANT
rs113500346 Likely Benign: Dyggve-Melchior-Clausen syndrome; Smith-McCort dysplasia 49,044,033(+) C/T THREE_PRIME_UTR_VARIANT
rs1471488189 Pathogenic: Dyggve-Melchior-Clausen syndrome 49,044,186(+) AT/A FRAMESHIFT_VARIANT
rs201928717 Benign/Likely Benign: not specified; not provided 49,044,058(+) G/A SYNONYMOUS_VARIANT
rs45452499 Uncertain Significance: Dyggve-Melchior-Clausen syndrome; Smith-McCort dysplasia 49,044,043(+) A/G THREE_PRIME_UTR_VARIANT

Additional dbSNP identifiers (rs#s) for LOC100129878 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129878 Gene

Disorders for LOC100129878 Gene

Additional Disease Information for LOC100129878

No disorders were found for LOC100129878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129878 Gene

Publications for LOC100129878 Gene

No publications were found for LOC100129878 Gene.

No data available for Mastermind for LOC100129878 Gene

Products for LOC100129878 Gene

Sources for LOC100129878 Gene