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Aliases for LOC100129878 Gene

Subcategory (RNA class) for LOC100129878 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129878 Gene

  • Uncharacterized LOC100129878 3
  • AC016866.1 5

External Ids for LOC100129878 Gene

Previous GeneCards Identifiers for LOC100129878 Gene

  • GC18U900406
  • GC18P044804
  • GC18P046550

Summaries for LOC100129878 Gene

GeneCards Summary for LOC100129878 Gene

LOC100129878 (Uncharacterized LOC100129878) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129878 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129878 Gene

Genomics for LOC100129878 Gene

GeneHancer (GH) Regulatory Elements for LOC100129878 Gene

Promoters and enhancers for LOC100129878 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J049023 Enhancer 1 FANTOM5 Ensembl ENCODE dbSUPER 650.7 +0.7 697 2.7 POLR2A PRDM10 LOC100129878 MIR4744
GH18J048872 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 39.7 -150.1 -150140 2 ZFP64 FEZF1 ZNF213 ZNF548 FOS SP3 ZC3H11A REST ZNF592 ZNF610 RPL17 LOC100129878 ENSG00000266696 LOC105372107 ENSG00000265128 ENSG00000263895 LOC101928144 SRP72P1 SMAD2 CTIF
GH18J049019 Enhancer 1.4 Ensembl ENCODE dbSUPER 30.8 -2.5 -2504 3.1 HDGF CLOCK ARID4B SIN3A YBX1 ZNF2 SLC30A9 ZNF416 ZNF143 ZNF207 LOC105372109 RPL17 LOC100129878 DYM ZBTB7C
GH18J049459 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 13.2 +436.7 436719 1.9 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207 DYM RPL17 MBD1 CXXC1 LOC100129878 ENSG00000263895
GH18J048987 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -29.9 -29947 11.6 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 ZNF213 ZNF416 FOS KLF13 SMAD7 LOC100129878 RPL17 SCARNA17 LIPG DYM ENSG00000280335 LOC105372108
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129878 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129878 gene promoter:
  • Pax-4a
  • NF-E2 p45
  • NF-E2
  • Lmo2
  • STAT3
  • STAT5A
  • Hlf
  • AREB6
  • LyF-1
  • CP2

Genomic Locations for LOC100129878 Gene

Genomic Locations for LOC100129878 Gene
chr18:49,023,703-49,048,474
(GRCh38/hg38)
Size:
24,772 bases
Orientation:
Plus strand

Genomic View for LOC100129878 Gene

Genes around LOC100129878 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129878 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129878 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129878 Gene

Proteins for LOC100129878 Gene

Post-translational modifications for LOC100129878 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129878 Gene

Domains & Families for LOC100129878 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129878 Gene

Function for LOC100129878 Gene

Phenotypes From GWAS Catalog for LOC100129878 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129878 Gene

Localization for LOC100129878 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129878 Gene

Pathways & Interactions for LOC100129878 Gene

SuperPathways for LOC100129878 Gene

No Data Available

Interacting Proteins for LOC100129878 Gene

Gene Ontology (GO) - Biological Process for LOC100129878 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129878 Gene

Drugs & Compounds for LOC100129878 Gene

No Compound Related Data Available

Transcripts for LOC100129878 Gene

mRNA/cDNA for LOC100129878 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129878 Gene

No ASD Table

Relevant External Links for LOC100129878 Gene

GeneLoc Exon Structure for
LOC100129878

Expression for LOC100129878 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129878 Gene

Orthologs for LOC100129878 Gene

Evolution for LOC100129878 Gene

ENSEMBL:
Gene Tree for LOC100129878 (if available)
TreeFam:
Gene Tree for LOC100129878 (if available)

No data available for Orthologs for LOC100129878 Gene

Paralogs for LOC100129878 Gene

No data available for Paralogs for LOC100129878 Gene

Variants for LOC100129878 Gene

Sequence variations from dbSNP and Humsavar for LOC100129878 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs113500346 likely-benign, Smith-McCort dysplasia, Dyggve-Melchior-Clausen syndrome 49,044,033(+) C/T intron_variant
rs45452499 uncertain-significance, Smith-McCort dysplasia, Dyggve-Melchior-Clausen syndrome 49,044,043(+) A/G intron_variant
rs528865224 uncertain-significance, Dyggve-Melchior-Clausen syndrome, Smith-McCort dysplasia 49,044,066(+) C/A/T intron_variant
rs757286463 uncertain-significance, Dyggve-Melchior-Clausen syndrome, Smith-McCort dysplasia 49,044,177(+) C/G/T intron_variant
rs932215477 uncertain-significance, Smith-McCort dysplasia, Dyggve-Melchior-Clausen syndrome 49,043,932(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129878 Gene

Disorders for LOC100129878 Gene

No disorders were found for LOC100129878 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129878 Gene

Publications for LOC100129878 Gene

No publications were found for LOC100129878 Gene.

Products for LOC100129878 Gene

Sources for LOC100129878 Gene

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