Aliases for LOC100129697 Gene

Subcategory (RNA class) for LOC100129697 Gene

lncRNA

Number of RNA Genes sources:

1 / 17

Aliases for LOC100129697 Gene

  • Uncharacterized LOC100129697 3 5
  • Lnc-TRAPPC2L-2 165
  • AC092384.1 5

External Ids for LOC100129697 Gene

Previous GeneCards Identifiers for LOC100129697 Gene

  • GC16P087535
  • GC16P089006
  • GC16P074704

Summaries for LOC100129697 Gene

GeneCards Summary for LOC100129697 Gene

LOC100129697 (Uncharacterized LOC100129697) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129697 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129697 Gene

Genomics for LOC100129697 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129697 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129697 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100129697

Top Transcription factor binding sites by QIAGEN in the LOC100129697 gene promoter:
  • ARP-1
  • CP2
  • CUTL1
  • FOXI1
  • HFH-3
  • HSF2
  • LCR-F1
  • NF-1
  • NF-1/L
  • Roaz

Genomic Locations for LOC100129697 Gene

Genomic Locations for LOC100129697 Gene
chr16:88,939,271-88,953,782
(GRCh38/hg38)
Size:
14,512 bases
Orientation:
Plus strand
chr16:89,006,197-89,017,932
(GRCh37/hg19)
Size:
11,736 bases
Orientation:
Plus strand

Genomic View for LOC100129697 Gene

Genes around LOC100129697 on UCSC Golden Path with GeneCards custom track
LOC100129697 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LOC100129697 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129697 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129697 Gene

Proteins for LOC100129697 Gene

Post-translational modifications for LOC100129697 Gene

No Post-translational modifications

Other Protein References for LOC100129697 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100129697 Gene

Domains & Families for LOC100129697 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129697 Gene

Function for LOC100129697 Gene

Phenotypes From GWAS Catalog for LOC100129697 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129697 Gene

Localization for LOC100129697 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129697 Gene

Pathways & Interactions for LOC100129697 Gene

PathCards logo

SuperPathways for LOC100129697 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129697 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129697 Gene

Drugs & Compounds for LOC100129697 Gene

No Compound Related Data Available

Transcripts for LOC100129697 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129697 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007DCF6E_9606 lncRNA 1812 2

Ensembl: ENST00000378347 (view in UCSC) ,

LNCipedia: lnc-TRAPPC2L-2:4,

LOC100129697 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100129697 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129697 Gene

No ASD Table

Relevant External Links for LOC100129697 Gene

GeneLoc Exon Structure for
LOC100129697

Expression for LOC100129697 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129697 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129697 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.8) and Brain - Cerebellum (x5.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129697

SOURCE GeneReport for Unigene cluster for LOC100129697 Gene:

Hs.689377
genes like me logo Genes that share expression patterns with LOC100129697: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129697 Gene

Orthologs for LOC100129697 Gene

Evolution for LOC100129697 Gene

ENSEMBL:
Gene Tree for LOC100129697 (if available)
TreeFam:
Gene Tree for LOC100129697 (if available)

No data available for Orthologs for LOC100129697 Gene

Paralogs for LOC100129697 Gene

No data available for Paralogs for LOC100129697 Gene

Variants for LOC100129697 Gene

Additional dbSNP identifiers (rs#s) for LOC100129697 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100129697 Gene

Variant ID Type Subtype PubMed ID
dgv37n68 CNV loss 17160897
esv1433786 CNV deletion 17803354
esv2036557 CNV deletion 18987734
esv2658652 CNV deletion 23128226
esv2715069 CNV deletion 23290073
esv2715070 CNV deletion 23290073
esv2715071 CNV deletion 23290073
nsv1061256 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1066077 CNV gain 25217958
nsv1071313 CNV deletion 25765185
nsv471115 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv521217 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573719 CNV loss 21841781
nsv827839 CNV gain 20364138
nsv827840 CNV gain 20364138
nsv952071 CNV deletion 24416366

Variation tolerance for LOC100129697 Gene

Gene Damage Index Score: 0.02; 0.53% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional Variant Information for LOC100129697 Gene

Disorders for LOC100129697 Gene

No disorders were found for LOC100129697 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129697 Gene

Publications for LOC100129697 Gene

No publications were found for LOC100129697 Gene.

No data available for Mastermind for LOC100129697 Gene

Products for LOC100129697 Gene

Sources for LOC100129697 Gene