LOC100129697 Gene (RNA Gene)

Uncharacterized LOC100129697

GC16P088939
GIFtS:
10
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Aliases for LOC100129697 Gene

Data sources for LOC100129697 Gene:

Subcategory (RNA class) for LOC100129697 Gene

lncRNA

Aliases for LOC100129697 Gene

External Ids for LOC100129697 Gene

Previous GeneCards Identifiers for LOC100129697 Gene

  • GC16P087535
  • GC16P089006
  • GC16P074704

Summaries for LOC100129697 Gene

GeneCards Summary for LOC100129697 Gene

LOC100129697 (Uncharacterized LOC100129697) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129697 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129697 Gene

Genomics for LOC100129697 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LOC100129697 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16J088935 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 -0.2 -237 6.7 ZNF217 CTCF ELF1 SIN3A MBD2 ZNF341 SMC3 RAD21 CTBP1 SMARCA5 CBFA2T3 ENSG00000205018 ENSG00000261226 LOC100129697 LOC107984871 LOC101927793 LOC105371409
GH16J088943 Enhancer 0.5 Ensembl 0.4 +6.1 6130 2.4 ZIC2 NFIA OSR2 PRDM10 POLR2A ZFHX2 WT1 NFIC CBFA2T3 CDH15 LINC02138 PABPN1L ENSG00000205018 LOC100129697 HSALNG0113563 LOC107984871 LOC105371409
GH16J088930 Enhancer 0.3 Ensembl 0.4 -9.2 -9170 0.6 ZNF580 LOC105371409 LOC100129697 CBFA2T3
GH16J088932 Enhancer 0.2 Ensembl 0.4 -8.3 -8270 0.4 LOC105371409 LOC100129697 CBFA2T3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129697 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100129697

Top Transcription factor binding sites by QIAGEN in the LOC100129697 gene promoter:
  • ARP-1
  • CP2
  • CUTL1
  • FOXI1
  • HFH-3
  • HSF2
  • LCR-F1
  • NF-1
  • NF-1/L
  • Roaz

Genomic Locations for LOC100129697 Gene

Latest Assembly
chr16:88,939,271-88,953,782
(GRCh38/hg38)
Size:
14,512 bases
Orientation:
Plus strand

Previous Assembly
chr16:89,005,679-89,020,190
(GRCh37/hg19 by Entrez Gene)
Size:
14,512 bases
Orientation:
Plus strand

Genomic View for LOC100129697 Gene

Genes around LOC100129697 on UCSC Golden Path with GeneCards custom track
LOC100129697 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100129697 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129697 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC100129697 Gene

Proteins for LOC100129697 Gene

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Post-translational modifications for LOC100129697 Gene

No Post-translational modifications

Other Protein References for LOC100129697 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100129697 Gene

Domains & Families for LOC100129697 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129697 Gene

Function for LOC100129697 Gene

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  4. Inhibitory RNAs for research
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  6. Cell Lines for research

Phenotypes From GWAS Catalog for LOC100129697 Gene

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129697 Gene

Localization for LOC100129697 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129697 Gene

Pathways & Interactions for LOC100129697 Gene

PathCards logo

SuperPathways for LOC100129697 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129697 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129697 Gene

Drugs & Compounds for LOC100129697 Gene

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No Compound Related Data Available

Transcripts for LOC100129697 Gene

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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129697 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0001BBE657_9606 lncRNA 4588 1

RefSeq: NR_168285,

LOC100129697 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100129697 Gene

1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :

CRISPR products for research

Inhibitory RNAs for research

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129697 Gene

No ASD Table

Relevant External Links for LOC100129697 Gene

GeneLoc Exon Structure for
LOC100129697

Expression for LOC100129697 Gene

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mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129697 Gene

mRNA expression in normal human tissues for LOC100129697 Gene
mRNA expression by GTEx for LOC100129697 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129697 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.8) and Brain - Cerebellum (x5.7).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129697

SOURCE GeneReport for Unigene cluster for LOC100129697 Gene:

Hs.689377
genes like me logo Genes that share expression patterns with LOC100129697: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129697 Gene

Orthologs for LOC100129697 Gene

No data available for Orthologs and Evolution for LOC100129697 Gene

Paralogs for LOC100129697 Gene

No data available for Paralogs for LOC100129697 Gene

Variants for LOC100129697 Gene

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dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100129697 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LOC100129697 Gene

Variant ID Type Subtype PubMed ID
dgv37n68 CNV loss 17160897
esv1433786 CNV deletion 17803354
esv2036557 CNV deletion 18987734
esv2658652 CNV deletion 23128226
esv2715069 CNV deletion 23290073
esv2715070 CNV deletion 23290073
esv2715071 CNV deletion 23290073
nsv1061256 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1066077 CNV gain 25217958
nsv1071313 CNV deletion 25765185
nsv471115 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv521217 CNV loss 19592680
nsv573674 CNV gain 21841781
nsv573719 CNV loss 21841781
nsv827839 CNV gain 20364138
nsv827840 CNV gain 20364138
nsv952071 CNV deletion 24416366

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Variation tolerance and Additional Variant Information for LOC100129697 Gene

Disorders for LOC100129697 Gene

No disorders were found for LOC100129697 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129697 Gene

Publications for LOC100129697 Gene

No publications were found for LOC100129697 Gene.

No data available for Mastermind for LOC100129697 Gene

Products for LOC100129697 Gene

Sources for LOC100129697 Gene