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Aliases for LOC100129697 Gene
Subcategory (RNA class) for LOC100129697 Gene
lncRNA
Number of RNA Genes sources:
1 / 17
External Ids for LOC100129697 Gene
- Entrez Gene: 100129697
- Ensembl: ENSG00000205018
Previous GeneCards Identifiers for LOC100129697 Gene
- GC16P087535
- GC16P089006
- GC16P074704
Summaries for LOC100129697 Gene
GeneCards Summary for LOC100129697 Gene
LOC100129697 (Uncharacterized LOC100129697) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100129697 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129697 Gene
Genomics for LOC100129697 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100129697 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100129697 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for LOC100129697
- Top Transcription factor binding sites by QIAGEN in the LOC100129697 gene promoter:
-
- ARP-1
- CP2
- CUTL1
- FOXI1
- HFH-3
- HSF2
- LCR-F1
- NF-1
- NF-1/L
- Roaz
Genomic Locations for LOC100129697 Gene
Genomic Locations for LOC100129697 Gene
- chr16:88,939,271-88,953,782
- (GRCh38/hg38)
- Size:
- 14,512 bases
- Orientation:
- Plus strand
- chr16:89,006,197-89,017,932
- (GRCh37/hg19)
- Size:
- 11,736 bases
- Orientation:
- Plus strand
Genomic View for LOC100129697 Gene
Genes around LOC100129697 on UCSC Golden Path with GeneCards custom track
LOC100129697 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q24.3 by Entrez Gene
- 16q24.3 by Ensembl
LOC100129697 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100129697 Gene
Proteins for LOC100129697 Gene
Post-translational modifications for LOC100129697 Gene
No Post-translational modifications
Other Protein References for LOC100129697 Gene
- REFSEQ proteins:
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100129697
- Origene Custom Protein Services for LOC100129697
No data available for DME Specific Peptides for LOC100129697 Gene
Domains & Families for LOC100129697 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129697 Gene
Function for LOC100129697 Gene
Phenotypes From GWAS Catalog for LOC100129697 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
-
OriGene CRISPR knockouts for LOC100129697
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC100129697
miRNA Products
Inhibitory RNA Products
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC100129697
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129697 Gene
Localization for LOC100129697 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129697 Gene
Transcripts for LOC100129697 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129697 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00007DCF6E_9606 | lncRNA | 1812 | 2 |
Ensembl: ENST00000378347 (view in UCSC) , LNCipedia: lnc-TRAPPC2L-2:4, |
LOC100129697 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100129697 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
CRISPR Products
-
OriGene CRISPR knockouts for LOC100129697
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC100129697
miRNA Products
Inhibitory RNA Products
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697
Clone Products
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC100129697
Relevant External Links for LOC100129697 Gene
- GeneLoc Exon Structure for
- LOC100129697
Expression for LOC100129697 Gene
mRNA differential expression in normal tissues according to GTEx for LOC100129697 Gene
This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.8) and Brain - Cerebellum (x5.7).
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129697
SOURCE GeneReport for Unigene cluster for LOC100129697 Gene:
Hs.689377
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129697 Gene
Orthologs for LOC100129697 Gene
No data available for Orthologs for LOC100129697 Gene
Paralogs for LOC100129697 Gene
No data available for Paralogs for LOC100129697 Gene
Variants for LOC100129697 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv37n68 | CNV | loss | 17160897 |
| esv1433786 | CNV | deletion | 17803354 |
| esv2036557 | CNV | deletion | 18987734 |
| esv2658652 | CNV | deletion | 23128226 |
| esv2715069 | CNV | deletion | 23290073 |
| esv2715070 | CNV | deletion | 23290073 |
| esv2715071 | CNV | deletion | 23290073 |
| nsv1061256 | CNV | gain | 25217958 |
| nsv1063024 | CNV | gain | 25217958 |
| nsv1066077 | CNV | gain | 25217958 |
| nsv1071313 | CNV | deletion | 25765185 |
| nsv471115 | CNV | loss | 18288195 |
| nsv482951 | CNV | loss | 15286789 |
| nsv521217 | CNV | loss | 19592680 |
| nsv573674 | CNV | gain | 21841781 |
| nsv573719 | CNV | loss | 21841781 |
| nsv827839 | CNV | gain | 20364138 |
| nsv827840 | CNV | gain | 20364138 |
| nsv952071 | CNV | deletion | 24416366 |
Gene Damage Index Score:
0.02;
0.53% of all genes are more intolerant (likely to be disease-causing)
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Additional Variant Information for LOC100129697 Gene
Disorders for LOC100129697 Gene
No disorders were found for LOC100129697 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129697 Gene
Publications for LOC100129697 Gene
No publications were found for LOC100129697 Gene.
No data available for Mastermind for LOC100129697 Gene
Products for LOC100129697 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100129697
- Origene Custom Protein Services for LOC100129697
- Browse OriGene Inhibitory RNA Products For LOC100129697
- Browse OriGene qPCR primer pairs and template standards
- OriGene CRISPR knockouts for LOC100129697
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for LOC100129697 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for LOC100129697 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for LOC100129697 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for LOC100129697 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for LOC100129697
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for CRISPR/Cas9 clones, lentivirus and AAV products for LOC100129697
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles and/or promoter clone products for LOC100129697
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100129697
- Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697
Sources for LOC100129697 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB