Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129697 Gene

Aliases for LOC100129697 Gene

  • Uncharacterized LOC100129697 3
  • Uncharacterized Protein LOC100129697 3
  • AC092384.1 5

External Ids for LOC100129697 Gene

Previous GeneCards Identifiers for LOC100129697 Gene

  • GC16P087535
  • GC16P074704

Summaries for LOC100129697 Gene

GeneCards Summary for LOC100129697 Gene

LOC100129697 (Uncharacterized LOC100129697) is a Protein Coding gene.

Additional gene information for LOC100129697 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129697 Gene

Genomics for LOC100129697 Gene

GeneHancer (GH) Regulatory Elements for LOC100129697 Gene

Promoters and enhancers for LOC100129697 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J088938 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 650.7 +0.6 555 4 ZNF133 SIN3A KLF14 RAD21 ZNF335 GLIS2 ZNF143 RCOR1 SMARCA5 ZNF398 CBFA2T3 LOC100129697 ENSG00000261226 PIR55515
GH16J088967 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 12.6 +33.7 33699 12.4 HDGF PKNOX1 SMAD1 ARNT YBX1 IRF4 POLR2B ZNF766 CBX5 ZNF207 CBFA2T3 ANKRD11 ACSF3 ZNF778 ZC3H18 PABPN1L LOC100129697 SNORD68 APRT RPL13
GH16J088990 Enhancer 1.8 VISTA Ensembl ENCODE dbSUPER 12.3 +53.4 53427 4.6 HNRNPUL1 PKNOX1 SMAD1 ARNT ZNF766 E2F8 ZNF143 ZNF263 REST ZNF592 ANKRD11 AFG3L1P SNORD68 ACSF3 ENSG00000268218 ZC3H18 RPL13 LOC101927863 TCF25 LOC100129697
GH16J089095 Promoter/Enhancer 1.7 EPDnew ENCODE dbSUPER 12.2 +159.8 159826 8.8 PKNOX1 ATF1 ARNT SIN3A IRF4 TCF12 ZNF121 ZNF766 CBX5 GATA2 ACSF3 CDK10 CBFA2T3 LOC100129697 LINC02138 CDH15 PABPN1L SLC22A31 ENSG00000260279 PIR52081
GH16J088879 Enhancer 1.1 Ensembl ENCODE 12.2 -58.9 -58921 3.7 HDGF HNRNPUL1 ZFP64 SIN3A ZNF2 ZBTB7B POLR2B KLF7 RUNX3 KLF13 LOC101927793 GALNS SNORD68 TRAPPC2L RPL13 ANKRD11 LOC100129697 ZC3H18 CBFA2T3 BANP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129697 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129697 gene promoter:
  • CUTL1
  • CP2
  • HSF2
  • NF-1/L
  • NF-1
  • ARP-1
  • LCR-F1
  • Roaz
  • HFH-3
  • FOXI1

Genomic Locations for LOC100129697 Gene

Genomic Locations for LOC100129697 Gene
chr16:88,939,789-88,951,524
(GRCh38/hg38)
Size:
11,736 bases
Orientation:
Plus strand
chr16:89,006,197-89,017,932
(GRCh37/hg19)
Size:
11,736 bases
Orientation:
Plus strand

Genomic View for LOC100129697 Gene

Genes around LOC100129697 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129697 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129697 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129697 Gene

Proteins for LOC100129697 Gene

Post-translational modifications for LOC100129697 Gene

No Post-translational modifications

Other Protein References for LOC100129697 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100129697 Gene

Domains & Families for LOC100129697 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129697 Gene

Function for LOC100129697 Gene

Phenotypes From GWAS Catalog for LOC100129697 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129697 Gene

Localization for LOC100129697 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129697 Gene

Pathways & Interactions for LOC100129697 Gene

SuperPathways for LOC100129697 Gene

No Data Available

Interacting Proteins for LOC100129697 Gene

Gene Ontology (GO) - Biological Process for LOC100129697 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129697 Gene

Drugs & Compounds for LOC100129697 Gene

No Compound Related Data Available

Transcripts for LOC100129697 Gene

mRNA/cDNA for LOC100129697 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100129697 Gene

Uncharacterized LOC100129697:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for LOC100129697

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129697 Gene

No ASD Table

Relevant External Links for LOC100129697 Gene

GeneLoc Exon Structure for
LOC100129697

Expression for LOC100129697 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129697 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129697 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x5.8) and Brain - Cerebellum (x5.7).

SOURCE GeneReport for Unigene cluster for LOC100129697 Gene:

Hs.689377
genes like me logo Genes that share expression patterns with LOC100129697: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129697 Gene

Orthologs for LOC100129697 Gene

Evolution for LOC100129697 Gene

ENSEMBL:
Gene Tree for LOC100129697 (if available)
TreeFam:
Gene Tree for LOC100129697 (if available)

No data available for Orthologs for LOC100129697 Gene

Paralogs for LOC100129697 Gene

No data available for Paralogs for LOC100129697 Gene

Variants for LOC100129697 Gene

Sequence variations from dbSNP and Humsavar for LOC100129697 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000007589 -- 88,945,147(+) A/G intron_variant
rs1000010322 -- 88,944,171(+) A/T intron_variant
rs1000181458 -- 88,939,965(+) GTCCG/GTCCGGTCCG upstream_transcript_variant
rs1000236659 -- 88,948,893(+) T/C intron_variant
rs1000299026 -- 88,939,169(+) T/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129697 Gene

Variant ID Type Subtype PubMed ID
nsv952071 CNV deletion 24416366
nsv827840 CNV gain 20364138
nsv827839 CNV gain 20364138
nsv573719 CNV loss 21841781
nsv573674 CNV gain 21841781
nsv521217 CNV loss 19592680
nsv482951 CNV loss 15286789
nsv471115 CNV loss 18288195
nsv1071313 CNV deletion 25765185
nsv1066077 CNV gain 25217958
nsv1063024 CNV gain 25217958
nsv1061256 CNV gain 25217958
esv2715071 CNV deletion 23290073
esv2715070 CNV deletion 23290073
esv2715069 CNV deletion 23290073
esv2658652 CNV deletion 23128226
esv2036557 CNV deletion 18987734
esv1433786 CNV deletion 17803354
dgv37n68 CNV loss 17160897

Variation tolerance for LOC100129697 Gene

Gene Damage Index Score: 0.02; 0.53% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Additional Variant Information for LOC100129697 Gene

Disorders for LOC100129697 Gene

Additional Disease Information for LOC100129697

No disorders were found for LOC100129697 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129697 Gene

Publications for LOC100129697 Gene

No publications were found for LOC100129697 Gene.

Products for LOC100129697 Gene

Sources for LOC100129697 Gene

Content
Loading form....