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Aliases for LOC100129661 Gene

Aliases for LOC100129661 Gene

  • HCLS1 Associated Protein X-1 Pseudogene 3
  • U40455.1 5

External Ids for LOC100129661 Gene

Previous GeneCards Identifiers for LOC100129661 Gene

  • GC0XU900958
  • GC0XM147088
  • GC0XM147280

Summaries for LOC100129661 Gene

GeneCards Summary for LOC100129661 Gene

LOC100129661 (HCLS1 Associated Protein X-1 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129661 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129661 Gene

Genomics for LOC100129661 Gene

GeneHancer (GH) Regulatory Elements for LOC100129661 Gene

Promoters and enhancers for LOC100129661 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI148198 Promoter 0.5 Ensembl 550.8 +0.2 178 0.4 GC0XM148198 LOC100129661 AFF2 GC0XM148184
GH0XI148310 Enhancer 0.8 ENCODE dbSUPER 0.1 -112.1 -112050 2 MAX JUNB BATF GABPA POLR2A ETV6 RUNX3 MYC AFF2 GC0XP148362 PIR52150 PIR52149 PIR32877 GC0XP148360 GC0XP148359 GC0XP148358 GC0XP148357 GC0XP148356
GH0XI148247 Enhancer 0.2 FANTOM5 0.2 -48.3 -48329 0.2 LOC100129661 GC0XP148356 GC0XP148357 GC0XP148358 GC0XP148359 GC0XP148360 GC0XP148362 PIR32877 PIR52149 PIR52150
GH0XI148333 Enhancer 0.4 ENCODE dbSUPER 0.1 -135.1 -135075 1.6 AFF2 GC0XP148356 GC0XP148357 PIR52149 PIR52150 GC0XP148362 GC0XP148360 GC0XP148359 GC0XP148358 PIR32877
GH0XI148312 Enhancer 0.2 dbSUPER 0.1 -114.1 -114072 1 AFF2 GC0XP148356 GC0XP148357 GC0XP148358 GC0XP148359 GC0XP148360 GC0XP148362 PIR32877 PIR52149 PIR52150
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129661 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129661 Gene

Genomic Locations for LOC100129661 Gene
chrX:148,197,828-148,198,979
(GRCh38/hg38)
Size:
1,152 bases
Orientation:
Minus strand
chrX:147,279,348-147,280,499
(GRCh37/hg19)

Genomic View for LOC100129661 Gene

Genes around LOC100129661 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129661 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129661 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129661 Gene

Proteins for LOC100129661 Gene

Post-translational modifications for LOC100129661 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129661 Gene

Domains & Families for LOC100129661 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129661 Gene

Function for LOC100129661 Gene

Phenotypes From GWAS Catalog for LOC100129661 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129661 Gene

Localization for LOC100129661 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129661 Gene

Pathways & Interactions for LOC100129661 Gene

SuperPathways for LOC100129661 Gene

No Data Available

Interacting Proteins for LOC100129661 Gene

Gene Ontology (GO) - Biological Process for LOC100129661 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129661 Gene

Drugs & Compounds for LOC100129661 Gene

No Compound Related Data Available

Transcripts for LOC100129661 Gene

mRNA/cDNA for LOC100129661 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129661 Gene

No ASD Table

Relevant External Links for LOC100129661 Gene

GeneLoc Exon Structure for
LOC100129661

Expression for LOC100129661 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129661 Gene

genes like me logo Genes that share expression patterns with LOC100129661: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129661 Gene

Orthologs for LOC100129661 Gene

Evolution for LOC100129661 Gene

ENSEMBL:
Gene Tree for LOC100129661 (if available)
TreeFam:
Gene Tree for LOC100129661 (if available)

No data available for Orthologs for LOC100129661 Gene

Paralogs for LOC100129661 Gene

No data available for Paralogs for LOC100129661 Gene

Variants for LOC100129661 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129661 Gene

Disorders for LOC100129661 Gene

No disorders were found for LOC100129661 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129661 Gene

Publications for LOC100129661 Gene

  1. Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study. (PMID: 21177773) Moyer AM … Weinshilboum RM (Toxicological sciences : an official journal of the Society of Toxicology 2011) 3 58

Products for LOC100129661 Gene

Sources for LOC100129661 Gene

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