Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129620 Gene

Subcategory (RNA class) for LOC100129620 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129620 Gene

  • Uncharacterized LOC100129620 3
  • AL445433.2 5

External Ids for LOC100129620 Gene

Previous GeneCards Identifiers for LOC100129620 Gene

  • GC01U902012
  • GC01P099242
  • GC01P099470

Summaries for LOC100129620 Gene

GeneCards Summary for LOC100129620 Gene

LOC100129620 (Uncharacterized LOC100129620) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129620 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129620 Gene

Genomics for LOC100129620 Gene

GeneHancer (GH) Regulatory Elements for LOC100129620 Gene

Promoters and enhancers for LOC100129620 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J099004 Promoter 1.2 EPDnew Ensembl 650.7 +0.6 625 0.2 CTCF ZFHX2 MXI1 LOC100129620 PLPPR5
GH01J099006 Promoter/Enhancer 0.8 EPDnew ENCODE 650.7 +1.0 1028 0.2 BACH1 LOC100129620 PLPPR5 SNX7
GH01J099007 Promoter 0.8 EPDnew 650.7 +0.8 843 0.1 CTCF ZFHX2 BACH1 ZIC2 LOC100129620 PLPPR5
GH01J099005 Promoter 0.6 EPDnew 650.7 +1.5 1530 0.1 MXI1 PLPPR5 LOC100129620
GH01J099008 Enhancer 0.3 ENCODE 650.7 +1.3 1344 0.2 MXI1 LOC100129620 PLPPR5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129620 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129620 Gene

Genomic Locations for LOC100129620 Gene
chr1:99,004,276-99,148,852
(GRCh38/hg38)
Size:
144,577 bases
Orientation:
Plus strand
chr1:99,469,832-99,614,408
(GRCh37/hg19)
Size:
144,577 bases
Orientation:
Plus strand

Genomic View for LOC100129620 Gene

Genes around LOC100129620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129620 Gene

Proteins for LOC100129620 Gene

Post-translational modifications for LOC100129620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129620 Gene

Domains & Families for LOC100129620 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129620 Gene

Function for LOC100129620 Gene

Phenotypes From GWAS Catalog for LOC100129620 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129620 Gene

Localization for LOC100129620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129620 Gene

Pathways & Interactions for LOC100129620 Gene

SuperPathways for LOC100129620 Gene

No Data Available

Interacting Proteins for LOC100129620 Gene

Gene Ontology (GO) - Biological Process for LOC100129620 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129620 Gene

Drugs & Compounds for LOC100129620 Gene

No Compound Related Data Available

Transcripts for LOC100129620 Gene

mRNA/cDNA for LOC100129620 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100129620 Gene

Uncharacterized LOC100129620:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129620 Gene

No ASD Table

Relevant External Links for LOC100129620 Gene

GeneLoc Exon Structure for
LOC100129620

Expression for LOC100129620 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129620 Gene

SOURCE GeneReport for Unigene cluster for LOC100129620 Gene:

Hs.588631
genes like me logo Genes that share expression patterns with LOC100129620: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129620 Gene

Orthologs for LOC100129620 Gene

Evolution for LOC100129620 Gene

ENSEMBL:
Gene Tree for LOC100129620 (if available)
TreeFam:
Gene Tree for LOC100129620 (if available)

No data available for Orthologs for LOC100129620 Gene

Paralogs for LOC100129620 Gene

No data available for Paralogs for LOC100129620 Gene

Variants for LOC100129620 Gene

Sequence variations from dbSNP and Humsavar for LOC100129620 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000066060 -- 99,148,982(+) A/G downstream_transcript_variant
rs1000070156 -- 99,123,029(+) A/G intron_variant
rs1000076215 -- 99,071,976(+) CCC/C intron_variant
rs1000103950 -- 99,032,381(+) G/A intron_variant
rs1000107760 -- 99,049,776(+) T/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129620 Gene

Variant ID Type Subtype PubMed ID
nsv946090 CNV duplication 23825009
nsv830782 CNV loss 17160897
nsv830771 CNV loss 17160897
nsv546886 CNV loss 21841781
nsv546885 CNV loss 21841781
nsv546884 CNV loss 21841781
nsv462605 CNV loss 19166990
nsv2077 CNV insertion 18451855
esv3586914 CNV loss 21293372
esv3586913 CNV loss 21293372
esv3397812 CNV insertion 20981092
esv2678696 CNV deletion 23128226

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129620 Gene

Disorders for LOC100129620 Gene

Additional Disease Information for LOC100129620

No disorders were found for LOC100129620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129620 Gene

Publications for LOC100129620 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low SK … Nakamura Y (Cancer science 2013) 3 58
  2. A genome-wide association study provides evidence for association of chromosome 8p23 (MYP10) and 10q21.1 (MYP15) with high myopia in the French Population. (PMID: 23049088) Meng W … Malecaze F (Investigative ophthalmology & visual science 2012) 3 58
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100129620 Gene

Sources for LOC100129620 Gene

Content
Loading form....