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Aliases for LOC100129617 Gene
Data sources for LOC100129617 Gene:
Subcategory (RNA class) for LOC100129617 Gene
lncRNA
Aliases for LOC100129617 Gene
- Uncharacterized LOC100129617 (NCBI Entrez Gene)
- NONHSAG020103.2 (NONCODE)
- HSALNG0113003 (LncBook)
- Lnc-PLCG2-4 (LNCipedia)
- BCALM (NCBI Entrez Gene)
External Ids for LOC100129617 Gene
- NCBI Entrez Gene: 100129617
Previous GeneCards Identifiers for LOC100129617 Gene
- GC16U900810
- GC16P080257
- GC16P081698
Summaries for LOC100129617 Gene
GeneCards Summary for LOC100129617 Gene
LOC100129617 (Uncharacterized LOC100129617) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LOC100129617 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129617 Gene
Genomics for LOC100129617 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LOC100129617 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH16J081663 | Enhancer | 0.3 | dbSUPER | 250.7 | -1.3 | -1259 | 0.9 | POLR2A RBM22 | LOC100129617 CMIP HSALNG0113002 PLCG2 | |
| GH16J081648 | Promoter/Enhancer | 1.8 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 0.4 | -14.0 | -14034 | 4.9 | MNT IKZF1 BHLHE40 ARNT ZNF395 VEZF1 NBN ZEB2 TAL1 RELA | HSALNG0113002 LOC100129617 PLCG2 CMIP | |
| GH16J081666 | Enhancer | 0.9 | Ensembl ENCODE dbSUPER | 0.7 | +2.8 | 2789 | 2.9 | NONO KLF9 MYNN RBM22 ZSCAN4 HNRNPL EGR2 ZFHX2 | HSALNG0113004 CMIP LOC100129617 PLCG2 | |
| GH16J081660 | Enhancer | 0.4 | ENCODE dbSUPER | 0.7 | -4.1 | -4079 | 0.9 | RBM22 | LOC100129617 HSALNG0113002 PLCG2 CMIP | |
| GH16J081655 | Enhancer | 0.6 | Ensembl dbSUPER | 0.4 | -9.5 | -9452 | 1.4 | RBM22 EGR1 NFIA NFIB | HSALNG0113002 LOC100129617 PLCG2 CMIP |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LOC100129617 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LOC100129617 Gene
Latest Assembly
- chr16:81,665,353-81,667,276
- (GRCh38/hg38)
- Size:
- 1,924 bases
- Orientation:
- Plus strand
Previous Assembly
- chr16:81,698,959-81,700,881
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 1,923 bases
- Orientation:
- Plus strand
Genomic View for LOC100129617 Gene
Genes around LOC100129617 on UCSC Golden Path with GeneCards custom track
LOC100129617 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 16q23.3 by Entrez Gene
LOC100129617 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100129617 Gene
Proteins for LOC100129617 Gene
Post-translational modifications for LOC100129617 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LOC100129617 Gene
Domains & Families for LOC100129617 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129617 Gene
Function for LOC100129617 Gene
Phenotypes From GWAS Catalog for LOC100129617 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129617 Gene
Localization for LOC100129617 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129617 Gene
Transcripts for LOC100129617 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129617 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075EEE1_9606 | lncRNA | 1921 | 1 |
RefSeq: NR_045112, |
| URS00008B717F_9606 | lncRNA | 1921 | 2 |
LNCipedia: lnc-PLCG2-4:1, NONCODE: NONHSAT143952.2, |
| URS0000D573CF_9606 | lncRNA | 1923 | 1 |
LNCipedia: lnc-PLCG2-4:2, |
| URS0001BD3453_9606 | lncRNA | 1921 | 1 |
LncBook: HSALNT0234265, |
LOC100129617 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LOC100129617 Gene
- 2 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LOC100129617 Gene
- GeneLoc Exon Structure for
- LOC100129617
Expression for LOC100129617 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129617
SOURCE GeneReport for Unigene cluster for LOC100129617 Gene:
Hs.657151
Gene Expression Assays for research
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129617 Gene
Orthologs for LOC100129617 Gene
No data available for Orthologs and Evolution for LOC100129617 Gene
Paralogs for LOC100129617 Gene
No data available for Paralogs for LOC100129617 Gene
Variants for LOC100129617 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129617 Gene
Disorders for LOC100129617 Gene
No disorders were found for LOC100129617 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129617 Gene
Publications for LOC100129617 Gene
- BCALM (AC099524.1) Is a Human B Lymphocyte-Specific Long Noncoding RNA That Modulates B Cell Receptor-Mediated Calcium Signaling. (PMID: 32571842) Pyfrom SC … Payton JE (Journal of immunology (Baltimore, Md. : 1950) 2020) 3
No data available for Mastermind for LOC100129617 Gene
Products for LOC100129617 Gene
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- Browse OriGene Inhibitory RNA Products For LOC100129617
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100129617
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LOC100129617
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
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- Browse Sino Biological Antibodies
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- Browse cDNA Clones
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- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LOC100129617
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LOC100129617
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LOC100129617
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LOC100129617
Sources for LOC100129617 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB