Aliases for LOC100129617 Gene

Data sources for LOC100129617 Gene:

Subcategory (RNA class) for LOC100129617 Gene

lncRNA

Aliases for LOC100129617 Gene

External Ids for LOC100129617 Gene

Previous GeneCards Identifiers for LOC100129617 Gene

  • GC16U900810
  • GC16P080257
  • GC16P081698

Summaries for LOC100129617 Gene

GeneCards Summary for LOC100129617 Gene

LOC100129617 (Uncharacterized LOC100129617) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129617 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129617 Gene

Genomics for LOC100129617 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J081663 Enhancer 0.3 dbSUPER 250.7 -1.3 -1259 0.9 POLR2A RBM22 LOC100129617 CMIP HSALNG0113002 PLCG2
GH16J081648 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -14.0 -14034 4.9 MNT IKZF1 BHLHE40 ARNT ZNF395 VEZF1 NBN ZEB2 TAL1 RELA HSALNG0113002 LOC100129617 PLCG2 CMIP
GH16J081666 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.7 +2.8 2789 2.9 NONO KLF9 MYNN RBM22 ZSCAN4 HNRNPL EGR2 ZFHX2 HSALNG0113004 CMIP LOC100129617 PLCG2
GH16J081660 Enhancer 0.4 ENCODE dbSUPER 0.7 -4.1 -4079 0.9 RBM22 LOC100129617 HSALNG0113002 PLCG2 CMIP
GH16J081655 Enhancer 0.6 Ensembl dbSUPER 0.4 -9.5 -9452 1.4 RBM22 EGR1 NFIA NFIB HSALNG0113002 LOC100129617 PLCG2 CMIP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129617 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100129617 Gene

Latest Assembly
chr16:81,665,353-81,667,276
(GRCh38/hg38)
Size:
1,924 bases
Orientation:
Plus strand

Previous Assembly
chr16:81,698,959-81,700,881
(GRCh37/hg19 by Entrez Gene)
Size:
1,923 bases
Orientation:
Plus strand

Genomic View for LOC100129617 Gene

Genes around LOC100129617 on UCSC Golden Path with GeneCards custom track
LOC100129617 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100129617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129617 Gene

Proteins for LOC100129617 Gene

Post-translational modifications for LOC100129617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129617 Gene

Domains & Families for LOC100129617 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129617 Gene

Function for LOC100129617 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129617 Gene

Localization for LOC100129617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129617 Gene

Pathways & Interactions for LOC100129617 Gene

PathCards logo

SuperPathways for LOC100129617 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129617 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129617 Gene

Drugs & Compounds for LOC100129617 Gene

No Compound Related Data Available

Transcripts for LOC100129617 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129617 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EEE1_9606 lncRNA 1921 1

RefSeq: NR_045112,

URS00008B717F_9606 lncRNA 1921 2

LNCipedia: lnc-PLCG2-4:1,

NONCODE: NONHSAT143952.2,

URS0000D573CF_9606 lncRNA 1923 1

LNCipedia: lnc-PLCG2-4:2,

URS0001BD3453_9606 lncRNA 1921 1

LncBook: HSALNT0234265,

LOC100129617 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100129617 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129617 Gene

No ASD Table

Relevant External Links for LOC100129617 Gene

GeneLoc Exon Structure for
LOC100129617

Expression for LOC100129617 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129617 Gene

mRNA expression in normal human tissues for LOC100129617 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129617

SOURCE GeneReport for Unigene cluster for LOC100129617 Gene:

Hs.657151
genes like me logo Genes that share expression patterns with LOC100129617: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129617 Gene

Orthologs for LOC100129617 Gene

No data available for Orthologs and Evolution for LOC100129617 Gene

Paralogs for LOC100129617 Gene

No data available for Paralogs for LOC100129617 Gene

Variants for LOC100129617 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100129617 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129617 Gene

Disorders for LOC100129617 Gene

No disorders were found for LOC100129617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129617 Gene

Publications for LOC100129617 Gene

  1. BCALM (AC099524.1) Is a Human B Lymphocyte-Specific Long Noncoding RNA That Modulates B Cell Receptor-Mediated Calcium Signaling. (PMID: 32571842) Pyfrom SC … Payton JE (Journal of immunology (Baltimore, Md. : 1950) 2020) 3

No data available for Mastermind for LOC100129617 Gene

Products for LOC100129617 Gene

Sources for LOC100129617 Gene