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Aliases for LOC100129617 Gene

Subcategory (RNA class) for LOC100129617 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129617 Gene

  • Uncharacterized LOC100129617 3

External Ids for LOC100129617 Gene

ORGUL Members for LOC100129617 Gene

Previous GeneCards Identifiers for LOC100129617 Gene

  • GC16U900810
  • GC16P080257

Summaries for LOC100129617 Gene

GeneCards Summary for LOC100129617 Gene

LOC100129617 (Uncharacterized LOC100129617) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129617 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129617 Gene

Genomics for LOC100129617 Gene

GeneHancer (GH) Regulatory Elements for LOC100129617 Gene

Promoters and enhancers for LOC100129617 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J081663 Enhancer 0.3 dbSUPER 650.7 -1.3 -1260 0.9 RBM22 LOC100129617 CMIP LOC105371362
GH16J081648 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -14.0 -14035 4.9 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 NCOA1 ZNF592 LOC105371362 LOC100129617 CMIP
GH16J081666 Enhancer 0.7 ENCODE dbSUPER 0.7 +2.4 2388 2.1 ZFHX2 ZSCAN4 MYNN RBM22 EGR2 CMIP LOC100129617 GC16M081715
GH16J081660 Enhancer 0.5 ENCODE dbSUPER 0.7 -4.1 -4080 0.9 RBM22 LOC100129617 LOC105371362 CMIP
GH16J081691 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 +29.9 29893 7.6 HDGF CTCF MXI1 RB1 ARID4B MAX SIN3A RAD21 FOSL1 CC2D1A CMIP GCSH GC16M081715 LOC100129617
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129617 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129617 Gene

Genomic Locations for LOC100129617 Gene
chr16:81,665,354-81,667,276
(GRCh38/hg38)
Size:
1,923 bases
Orientation:
Plus strand
chr16:81,698,959-81,700,881
(GRCh37/hg19)
Size:
1,923 bases
Orientation:
Plus strand

Genomic View for LOC100129617 Gene

Genes around LOC100129617 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129617 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129617 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129617 Gene

Proteins for LOC100129617 Gene

Post-translational modifications for LOC100129617 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129617 Gene

Domains & Families for LOC100129617 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129617 Gene

Function for LOC100129617 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129617 Gene

Localization for LOC100129617 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129617 Gene

Pathways & Interactions for LOC100129617 Gene

SuperPathways for LOC100129617 Gene

No Data Available

Interacting Proteins for LOC100129617 Gene

Gene Ontology (GO) - Biological Process for LOC100129617 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129617 Gene

Drugs & Compounds for LOC100129617 Gene

No Compound Related Data Available

Transcripts for LOC100129617 Gene

mRNA/cDNA for LOC100129617 Gene

(2) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100129617 Gene

Uncharacterized LOC100129617:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129617 Gene

No ASD Table

Relevant External Links for LOC100129617 Gene

GeneLoc Exon Structure for
LOC100129617

Expression for LOC100129617 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129617 Gene

mRNA expression in normal human tissues for LOC100129617 Gene

SOURCE GeneReport for Unigene cluster for LOC100129617 Gene:

Hs.657151
genes like me logo Genes that share expression patterns with LOC100129617: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129617 Gene

Orthologs for LOC100129617 Gene

No data available for Orthologs and Evolution for LOC100129617 Gene

Paralogs for LOC100129617 Gene

No data available for Paralogs for LOC100129617 Gene

Variants for LOC100129617 Gene

Sequence variations from dbSNP and Humsavar for LOC100129617 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000087173 -- 81,665,888(+) C/T non_coding_transcript_variant
rs1000732156 -- 81,665,082(+) C/T upstream_transcript_variant
rs1001525052 -- 81,664,646(+) C/T upstream_transcript_variant
rs1001788183 -- 81,665,895(+) C/T non_coding_transcript_variant
rs1001861784 -- 81,665,614(+) A/T non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129617 Gene

Disorders for LOC100129617 Gene

Additional Disease Information for LOC100129617

No disorders were found for LOC100129617 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129617 Gene

Publications for LOC100129617 Gene

No publications were found for LOC100129617 Gene.

Products for LOC100129617 Gene

Sources for LOC100129617 Gene

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