Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129603 Gene

Subcategory (RNA class) for LOC100129603 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100129603 Gene

  • Uncharacterized LOC100129603 3
  • AC073316.1 5

External Ids for LOC100129603 Gene

Previous GeneCards Identifiers for LOC100129603 Gene

  • GC07U903087

Summaries for LOC100129603 Gene

GeneCards Summary for LOC100129603 Gene

LOC100129603 (Uncharacterized LOC100129603) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129603 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129603 Gene

Genomics for LOC100129603 Gene

GeneHancer (GH) Regulatory Elements for LOC100129603 Gene

Promoters and enhancers for LOC100129603 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I003175 Enhancer 0.2 ENCODE 555.8 -1.7 -1698 1.4 LOC100129603 GC07P003179
GH07I003181 Enhancer 0.9 ENCODE dbSUPER 9.3 -7.0 -7006 1.3 ELF3 SAP130 DMAP1 ZNF48 RARA TEAD3 GATAD1 POLR2A NFATC1 NR2F6 GC07P003179 CARD11 LOC100129603 SDK1 ENSG00000231892
GH07I003193 Enhancer 1 Ensembl ENCODE 5.5 -20.0 -20022 2.5 ELF3 FOXA2 SIN3A BMI1 RARA ETS1 ZNF143 CEBPB USF2 ELF1 CARD11 BRAT1 CHST12 EIF3B LOC105375132 SDK1 LOC100129603 NUDT1 ENSG00000231892 GC07P003179
GH07I003164 Enhancer 0.6 ENCODE 8.5 +10.2 10161 0.2 SOX5 SOX13 HMG20B TFE3 FOXA3 MNT PPARG RARA TEAD3 NFIL3 SDK1 LOC100129603 GC07P003136
GH07I003168 Enhancer 0.4 ENCODE 10.8 +5.6 5631 0.2 TCF7 ZBTB33 FOS LOC100129603 GC07P003136
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129603 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129603 gene promoter:

Genomic Locations for LOC100129603 Gene

Genomic Locations for LOC100129603 Gene
chr7:3,140,234-3,174,654
(GRCh38/hg38)
Size:
34,421 bases
Orientation:
Minus strand

Genomic View for LOC100129603 Gene

Genes around LOC100129603 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129603 Gene

Proteins for LOC100129603 Gene

Post-translational modifications for LOC100129603 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129603 Gene

Domains & Families for LOC100129603 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129603 Gene

Function for LOC100129603 Gene

Phenotypes From GWAS Catalog for LOC100129603 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129603 Gene

Localization for LOC100129603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129603 Gene

Pathways & Interactions for LOC100129603 Gene

SuperPathways for LOC100129603 Gene

No Data Available

Interacting Proteins for LOC100129603 Gene

Gene Ontology (GO) - Biological Process for LOC100129603 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129603 Gene

Drugs & Compounds for LOC100129603 Gene

No Compound Related Data Available

Transcripts for LOC100129603 Gene

mRNA/cDNA for LOC100129603 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129603 Gene

No ASD Table

Relevant External Links for LOC100129603 Gene

GeneLoc Exon Structure for
LOC100129603

Expression for LOC100129603 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129603 Gene

SOURCE GeneReport for Unigene cluster for LOC100129603 Gene:

Hs.652997
genes like me logo Genes that share expression patterns with LOC100129603: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129603 Gene

Orthologs for LOC100129603 Gene

Evolution for LOC100129603 Gene

ENSEMBL:
Gene Tree for LOC100129603 (if available)
TreeFam:
Gene Tree for LOC100129603 (if available)

No data available for Orthologs for LOC100129603 Gene

Paralogs for LOC100129603 Gene

No data available for Paralogs for LOC100129603 Gene

Variants for LOC100129603 Gene

Sequence variations from dbSNP and Humsavar for LOC100129603 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000043046 -- 3,140,990(-) T/C non_coding_transcript_variant
rs1000064279 -- 3,147,052(-) T/C intron_variant
rs1000435736 -- 3,148,512(-) G/A intron_variant
rs1000539906 -- 3,143,858(-) G/C intron_variant
rs1000669039 -- 3,144,379(-) G/A intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129603 Gene

Disorders for LOC100129603 Gene

Additional Disease Information for LOC100129603

No disorders were found for LOC100129603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129603 Gene

Publications for LOC100129603 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 3 58
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  4. Toward a complete human genome sequence. (PMID: 9847074) Sanger Center … Genome Sequencing Center (Genome research 1998) 3 58

Products for LOC100129603 Gene

Sources for LOC100129603 Gene

Content
Loading form....