Aliases for LOC100129554 Gene

Aliases for LOC100129554 Gene

  • Thyroid Hormone Receptor Interactor 4 Pseudogene 3

External Ids for LOC100129554 Gene

Previous GeneCards Identifiers for LOC100129554 Gene

  • GC06U901092
  • GC06P140005

Summaries for LOC100129554 Gene

GeneCards Summary for LOC100129554 Gene

LOC100129554 (Thyroid Hormone Receptor Interactor 4 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129554 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129554 Gene

Genomics for LOC100129554 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129554 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J139659 Enhancer 0.6 ENCODE 600.7 -0.5 -523 0.2 ZHX2 ATF7 CTBP1 ZNF217 GATAD2B MBD2 SIN3A DPF2 FOXA1 RAD21 ENSG00000205695 LOC100129554 lnc-HECA-6 piR-31938-011 CITED2 ENSG00000226571
GH06J139653 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.7 -4.5 -4542 3 CREB1 REST ZNF512 IKZF1 PRDM1 RFX1 PKNOX1 SP1 MCM7 SOX13 ENSG00000231329 LOC100129554 piR-31938-011 CITED2 ENSG00000226571
GH06J139647 Enhancer 1.1 Ensembl ENCODE 0.4 -11.0 -11001 2.6 ZNF512 LEF1 IKZF1 JUND DDX20 MTA2 PKNOX1 ZNF24 MTA1 REST LOC100129554 piR-31938-011 CITED2 ENSG00000226571
GH06J139625 Enhancer 1.1 FANTOM5 ENCODE 0.3 -33.5 -33540 2.7 TEAD4 LEF1 IKZF1 KDM1A DDX20 PKNOX1 SP1 DPF2 HDAC1 SOX6 piR-31938-011 LOC100129554 CITED2 ENSG00000226571
GH06J139617 Enhancer 0.8 Ensembl 0.3 -42.0 -42011 0.6 ZNF512 IKZF1 MTA2 PRDM1 ZNF24 DPF2 HDAC1 SOX6 TCF12 YBX3 piR-31938-011 LOC100129554 CITED2 ENSG00000226571
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129554 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100129554 Gene

Genomic Locations for LOC100129554 Gene
chr6:139,659,902-139,661,700
(GRCh38/hg38)
Size:
1,799 bases
Orientation:
Plus strand
chr6:139,981,039-139,982,837
(GRCh37/hg19)
Size:
1,799 bases
Orientation:
Plus strand

Genomic View for LOC100129554 Gene

Genes around LOC100129554 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129554 Gene

Proteins for LOC100129554 Gene

Post-translational modifications for LOC100129554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129554 Gene

Domains & Families for LOC100129554 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129554 Gene

Function for LOC100129554 Gene

Phenotypes From GWAS Catalog for LOC100129554 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129554 Gene

Localization for LOC100129554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129554 Gene

Pathways & Interactions for LOC100129554 Gene

PathCards logo

SuperPathways for LOC100129554 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129554 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129554 Gene

Drugs & Compounds for LOC100129554 Gene

No Compound Related Data Available

Transcripts for LOC100129554 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129554 Gene

No ASD Table

Relevant External Links for LOC100129554 Gene

GeneLoc Exon Structure for
LOC100129554

No data available for mRNA/cDNA for LOC100129554 Gene

Expression for LOC100129554 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129554 Gene

genes like me logo Genes that share expression patterns with LOC100129554: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129554 Gene

Orthologs for LOC100129554 Gene

No data available for Orthologs and Evolution for LOC100129554 Gene

Paralogs for LOC100129554 Gene

No data available for Paralogs for LOC100129554 Gene

Variants for LOC100129554 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129554 Gene

Disorders for LOC100129554 Gene

No disorders were found for LOC100129554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129554 Gene

Publications for LOC100129554 Gene

No publications were found for LOC100129554 Gene.

No data available for Mastermind for LOC100129554 Gene

Products for LOC100129554 Gene

Sources for LOC100129554 Gene