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Aliases for LOC100129554 Gene

Aliases for LOC100129554 Gene

  • Thyroid Hormone Receptor Interactor 4 Pseudogene 3
  • AL390205.1 5

External Ids for LOC100129554 Gene

Previous GeneCards Identifiers for LOC100129554 Gene

  • GC06U901092
  • GC06P140005

Summaries for LOC100129554 Gene

GeneCards Summary for LOC100129554 Gene

LOC100129554 (Thyroid Hormone Receptor Interactor 4 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129554 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129554 Gene

Genomics for LOC100129554 Gene

GeneHancer (GH) Regulatory Elements for LOC100129554 Gene

Promoters and enhancers for LOC100129554 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J139659 Enhancer 0.6 ENCODE 650.7 -0.5 -523 0.2 SMARCE1 NCOA3 SIN3A GATAD2B DPF2 MNT FOXA1 ZNF217 CTBP1 GATA3 LOC100129554 GC06P139661 ATP5PBP6
GH06J139653 Enhancer 0.9 ENCODE 0.7 -4.5 -4542 3 HDGF PKNOX1 FOXA2 NEUROD1 SIN3A YBX1 YY1 RXRA MCM5 REST ENSG00000231329 CITED2 LOC100129554 ATP5PBP6
GH06J139647 Enhancer 1 ENCODE 0.4 -11.2 -11232 2.1 PKNOX1 ATF1 ARNT NCOA2 TCF12 ZNF766 GATA2 ATF7 NCOA1 REST LOC100129554 ATP5PBP6
GH06J139625 Enhancer 1.3 FANTOM5 Ensembl ENCODE 0.3 -33.5 -33540 2.7 ATF1 FOXA2 PKNOX1 YY1 TCF12 ZNF766 GATA2 ZFP91 RXRA NCOA1 ATP5PBP6 LOC100129554
GH06J139640 Enhancer 0.4 Ensembl 0.4 -19.2 -19201 1 EBF1 MEF2B RUNX3 LOC100129554 ATP5PBP6
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129554 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129554 Gene

Genomic Locations for LOC100129554 Gene
chr6:139,659,902-139,661,700
(GRCh38/hg38)
Size:
1,799 bases
Orientation:
Plus strand
chr6:139,981,039-139,982,837
(GRCh37/hg19)
Size:
1,799 bases
Orientation:
Plus strand

Genomic View for LOC100129554 Gene

Genes around LOC100129554 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129554 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129554 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129554 Gene

Proteins for LOC100129554 Gene

Post-translational modifications for LOC100129554 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129554 Gene

Domains & Families for LOC100129554 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129554 Gene

Function for LOC100129554 Gene

Phenotypes From GWAS Catalog for LOC100129554 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129554 Gene

Localization for LOC100129554 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129554 Gene

Pathways & Interactions for LOC100129554 Gene

SuperPathways for LOC100129554 Gene

No Data Available

Interacting Proteins for LOC100129554 Gene

Gene Ontology (GO) - Biological Process for LOC100129554 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129554 Gene

Drugs & Compounds for LOC100129554 Gene

No Compound Related Data Available

Transcripts for LOC100129554 Gene

mRNA/cDNA for LOC100129554 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129554 Gene

No ASD Table

Relevant External Links for LOC100129554 Gene

GeneLoc Exon Structure for
LOC100129554

Expression for LOC100129554 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129554 Gene

genes like me logo Genes that share expression patterns with LOC100129554: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129554 Gene

Orthologs for LOC100129554 Gene

Evolution for LOC100129554 Gene

ENSEMBL:
Gene Tree for LOC100129554 (if available)
TreeFam:
Gene Tree for LOC100129554 (if available)

No data available for Orthologs for LOC100129554 Gene

Paralogs for LOC100129554 Gene

No data available for Paralogs for LOC100129554 Gene

Variants for LOC100129554 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129554 Gene

Disorders for LOC100129554 Gene

No disorders were found for LOC100129554 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129554 Gene

Publications for LOC100129554 Gene

No publications were found for LOC100129554 Gene.

Products for LOC100129554 Gene

Sources for LOC100129554 Gene

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