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Aliases for LOC100129540 Gene

Subcategory (RNA class) for LOC100129540 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC100129540 Gene

  • Uncharacterized LOC100129540 3
  • AC011944.1 5

External Ids for LOC100129540 Gene

Previous GeneCards Identifiers for LOC100129540 Gene

  • GC15P077059
  • GC15P079271
  • GC15U901315

Summaries for LOC100129540 Gene

GeneCards Summary for LOC100129540 Gene

LOC100129540 (Uncharacterized LOC100129540) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129540 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129540 Gene

Genomics for LOC100129540 Gene

GeneHancer (GH) Regulatory Elements for LOC100129540 Gene

Promoters and enhancers for LOC100129540 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I078979 Enhancer 1.4 FANTOM5 Ensembl ENCODE 550.8 +0.9 927 1.3 PKNOX1 CLOCK ATF1 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 ZNF48 GC15M078980 LOC100129540 RASGRF1
GH15I078976 Enhancer 1.2 FANTOM5 Ensembl ENCODE 550.8 -1.7 -1666 1.9 HDGF TEAD4 EBF1 BMI1 BATF KLF5 IRF4 RELA CTBP1 NFATC1 LOC100129540 RASGRF1 CTSH GC15M078960
GH15I078871 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.3 -105.1 -105082 4.6 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 MORF4L1 IREB2 ENSG00000259562 PSMA4 TBC1D2B RNU6-415P ENSG00000260988 WDR61 LOC100129540 ENSG00000259322
GH15I079002 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 12.2 +25.1 25128 3.3 ELF3 ZSCAN4 BMI1 BATF KLF5 IRF4 RAD21 EGR1 ATF7 ETV6 RASGRF1 LOC100129540 CTSH LOC105370917 GC15P079059
GH15I078878 Promoter/Enhancer 1.2 EPDnew ENCODE 11.3 -99.5 -99503 2.8 LEF1 ATF1 FEZF1 ZNF316 PATZ1 ZSCAN5C FOS ZNF600 RUNX3 MAFK MORF4L1 LOC100129540 ADAMTS7 CTSH RNU6-415P RPL21P116
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129540 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129540 gene promoter:

Genomic Locations for LOC100129540 Gene

Genomic Locations for LOC100129540 Gene
chr15:78,978,889-78,985,926
(GRCh38/hg38)
Size:
7,038 bases
Orientation:
Plus strand

Genomic View for LOC100129540 Gene

Genes around LOC100129540 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129540 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129540 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129540 Gene

Proteins for LOC100129540 Gene

Post-translational modifications for LOC100129540 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129540 Gene

Domains & Families for LOC100129540 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129540 Gene

Function for LOC100129540 Gene

Phenotypes From GWAS Catalog for LOC100129540 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129540 Gene

Localization for LOC100129540 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129540 Gene

Pathways & Interactions for LOC100129540 Gene

SuperPathways for LOC100129540 Gene

No Data Available

Interacting Proteins for LOC100129540 Gene

Gene Ontology (GO) - Biological Process for LOC100129540 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129540 Gene

Drugs & Compounds for LOC100129540 Gene

No Compound Related Data Available

Transcripts for LOC100129540 Gene

mRNA/cDNA for LOC100129540 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129540 Gene

Uncharacterized LOC100129540:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129540 Gene

No ASD Table

Relevant External Links for LOC100129540 Gene

GeneLoc Exon Structure for
LOC100129540

Expression for LOC100129540 Gene

SOURCE GeneReport for Unigene cluster for LOC100129540 Gene:

Hs.628768
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129540 Gene

Orthologs for LOC100129540 Gene

Evolution for LOC100129540 Gene

ENSEMBL:
Gene Tree for LOC100129540 (if available)
TreeFam:
Gene Tree for LOC100129540 (if available)

No data available for Orthologs for LOC100129540 Gene

Paralogs for LOC100129540 Gene

No data available for Paralogs for LOC100129540 Gene

Variants for LOC100129540 Gene

Sequence variations from dbSNP and Humsavar for LOC100129540 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000108850 -- 78,982,208(+) G/T intron_variant
rs1000118338 -- 78,979,140(+) A/G non_coding_transcript_variant
rs1000313704 -- 78,984,296(+) G/C intron_variant
rs1001518843 -- 78,983,715(+) A/G intron_variant
rs1001778781 -- 78,982,973(+) C/T intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129540 Gene

Disorders for LOC100129540 Gene

Additional Disease Information for LOC100129540

No disorders were found for LOC100129540 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129540 Gene

Publications for LOC100129540 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100129540 Gene

Sources for LOC100129540 Gene

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