Aliases for LOC100129534 Gene

Aliases for LOC100129534 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide N Pseudogene 3

External Ids for LOC100129534 Gene

Previous GeneCards Identifiers for LOC100129534 Gene

  • GC01U902063
  • GC01M002271

Summaries for LOC100129534 Gene

GeneCards Summary for LOC100129534 Gene

LOC100129534 (Small Nuclear Ribonucleoprotein Polypeptide N Pseudogene) is a Pseudogene.

Additional gene information for LOC100129534 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129534 Gene

Genomics for LOC100129534 Gene

GeneHancer (GH) Regulatory Elements for LOC100129534 Gene

Promoters and enhancers for LOC100129534 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J002352 Enhancer 0.7 Ensembl CraniofacialAtlas 500.7 -1.4 -1440 2.6 ZIC2 IRF1 KLF9 EBF1 MITF GLIS1 GLIS2 ZNF770 ENSG00000269896 LOC100129534 piR-33945 lnc-PEX10-6 piR-56120 MORN1 RER1 FAAP20 PEX10 ENSG00000272420
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129534 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129534 gene promoter:
  • CUTL1
  • GATA-1
  • HNF-1
  • HNF-1A
  • MyoD
  • NF-1
  • POU6F1 (c2)
  • Sox9
  • STAT3
  • TBP

Genomic Locations for LOC100129534 Gene

Genomic Locations for LOC100129534 Gene
chr1:2,350,414-2,352,661
(GRCh38/hg38)
Size:
2,248 bases
Orientation:
Minus strand
chr1:2,281,853-2,284,259
(GRCh37/hg19)
Size:
2,407 bases
Orientation:
Minus strand

Genomic View for LOC100129534 Gene

Genes around LOC100129534 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129534 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129534 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129534 Gene

Proteins for LOC100129534 Gene

Post-translational modifications for LOC100129534 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129534 Gene

Domains & Families for LOC100129534 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129534 Gene

Function for LOC100129534 Gene

Phenotypes From GWAS Catalog for LOC100129534 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129534 Gene

Localization for LOC100129534 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129534 Gene

Pathways & Interactions for LOC100129534 Gene

PathCards logo

SuperPathways for LOC100129534 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LOC100129534 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129534 Gene

Drugs & Compounds for LOC100129534 Gene

No Compound Related Data Available

Transcripts for LOC100129534 Gene

mRNA/cDNA for LOC100129534 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129534 Gene

No ASD Table

Relevant External Links for LOC100129534 Gene

GeneLoc Exon Structure for
LOC100129534

Expression for LOC100129534 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129534 Gene

mRNA expression in normal human tissues for LOC100129534 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129534

SOURCE GeneReport for Unigene cluster for LOC100129534 Gene:

Hs.655313
genes like me logo Genes that share expression patterns with LOC100129534: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129534 Gene

Orthologs for LOC100129534 Gene

No data available for Orthologs and Evolution for LOC100129534 Gene

Paralogs for LOC100129534 Gene

No data available for Paralogs for LOC100129534 Gene

Variants for LOC100129534 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100129534 Gene

Variant ID Type Subtype PubMed ID
nsv1003233 CNV gain 25217958
nsv470682 CNV loss 18288195
nsv4742 CNV insertion 18451855
nsv482937 CNV loss 15286789
nsv834668 CNV loss 17160897
nsv951557 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Variation tolerance and Additional Variant Information for LOC100129534 Gene

Disorders for LOC100129534 Gene

No disorders were found for LOC100129534 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129534 Gene

Publications for LOC100129534 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LOC100129534 Gene

Products for LOC100129534 Gene

Sources for LOC100129534 Gene