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Aliases for LOC100129534 Gene

Subcategory (RNA class) for LOC100129534 Gene

lncRNA

Aliases for LOC100129534 Gene

  • Small Nuclear Ribonucleoprotein Polypeptide N Pseudogene 3
  • AL513477.1 5

External Ids for LOC100129534 Gene

ORGUL Members for LOC100129534 Gene

Previous GeneCards Identifiers for LOC100129534 Gene

  • GC01U902063
  • GC01M002271

Summaries for LOC100129534 Gene

GeneCards Summary for LOC100129534 Gene

LOC100129534 (Small Nuclear Ribonucleoprotein Polypeptide N Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129534 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129534 Gene

Genomics for LOC100129534 Gene

GeneHancer (GH) Regulatory Elements for LOC100129534 Gene

Promoters and enhancers for LOC100129534 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J002411 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 12.6 -61.6 -61611 5.8 HDGF MLX ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B E2F8 ZNF207 PLCH2 PEX10 MORN1 SLC35E2A LOC100129381 ATAD3B LOC100129534 FAAP20 MIB2 SLC35E2B
GH01J002389 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.1 -40.3 -40305 6.5 PKNOX1 SMAD1 ARID4B SIN3A YY1 E2F8 ZNF207 ZNF143 FOS ZNF263 RER1 MORN1 ATAD3B SLC35E2A LOC100129381 CDK11A LOC100288379 CCNL2 FAAP20 SLC35E2B
GH01J001405 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 +945.8 945770 3.6 HDGF PKNOX1 SMAD1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 MRPL20 GC01P001407 RN7SL657P ATAD3B INTS11 LOC100288379 SLC35E2A CCNL2 ENSG00000230092 CDK11A
GH01J001373 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.7 +977.7 977697 3.9 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 AURKAIP1 GC01M001374 ENSG00000230092 CDK11A ATAD3B LOC100288379 ENSG00000237094 CCNL2 SDF4 LOC100288069
GH01J002986 Enhancer 0.8 dbSUPER 21.5 -635.1 -635124 2.9 ZNF473 ZNF133 ZNF704 ZNF195 YBX1 SALL2 GLI4 ZNF514 ZFHX2 ZNF776 GC01P002988 TP73-AS1 ENSG00000234396 ENSG00000272153 LOC100129534 MORN1 WRAP73 DFFB C1orf174 ACTRT2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129534 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129534 gene promoter:
  • STAT3
  • MyoD
  • GATA-1
  • NF-1
  • CUTL1
  • Sox9
  • TBP
  • HNF-1A
  • HNF-1
  • POU6F1 (c2)

Genomic Locations for LOC100129534 Gene

Genomic Locations for LOC100129534 Gene
chr1:2,350,414-2,352,820
(GRCh38/hg38)
Size:
2,407 bases
Orientation:
Minus strand
chr1:2,281,853-2,284,259
(GRCh37/hg19)
Size:
2,407 bases
Orientation:
Minus strand

Genomic View for LOC100129534 Gene

Genes around LOC100129534 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129534 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129534 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129534 Gene

ORGUL Member Location for LOC100129534 Gene

ORGUL Member Location for LOC100129534 gene

Proteins for LOC100129534 Gene

Post-translational modifications for LOC100129534 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129534 Gene

Domains & Families for LOC100129534 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129534 Gene

Function for LOC100129534 Gene

Phenotypes From GWAS Catalog for LOC100129534 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129534 Gene

Localization for LOC100129534 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129534 Gene

Pathways & Interactions for LOC100129534 Gene

SuperPathways for LOC100129534 Gene

No Data Available

Interacting Proteins for LOC100129534 Gene

Gene Ontology (GO) - Biological Process for LOC100129534 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129534 Gene

Drugs & Compounds for LOC100129534 Gene

No Compound Related Data Available

Transcripts for LOC100129534 Gene

mRNA/cDNA for LOC100129534 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129534 Gene

Small nuclear ribonucleoprotein polypeptide N pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129534 Gene

No ASD Table

Relevant External Links for LOC100129534 Gene

GeneLoc Exon Structure for
LOC100129534

Expression for LOC100129534 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129534 Gene

mRNA expression in normal human tissues for LOC100129534 Gene

SOURCE GeneReport for Unigene cluster for LOC100129534 Gene:

Hs.655313
genes like me logo Genes that share expression patterns with LOC100129534: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129534 Gene

Orthologs for LOC100129534 Gene

Evolution for LOC100129534 Gene

ENSEMBL:
Gene Tree for LOC100129534 (if available)
TreeFam:
Gene Tree for LOC100129534 (if available)

No data available for Orthologs for LOC100129534 Gene

Paralogs for LOC100129534 Gene

No data available for Paralogs for LOC100129534 Gene

Variants for LOC100129534 Gene

Sequence variations from dbSNP and Humsavar for LOC100129534 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000935283 -- 2,352,200(-) A/G non_coding_transcript_variant
rs1001024068 -- 2,351,933(-) G/C/T non_coding_transcript_variant
rs1001530612 -- 2,351,354(-) C/T non_coding_transcript_variant
rs1001760729 -- 2,351,103(-) G/A non_coding_transcript_variant
rs1002530154 -- 2,350,315(-) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129534 Gene

Variant ID Type Subtype PubMed ID
nsv951557 CNV deletion 24416366
nsv834668 CNV loss 17160897
nsv482937 CNV loss 15286789
nsv4742 CNV insertion 18451855
nsv470682 CNV loss 18288195
nsv1003233 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129534 Gene

Disorders for LOC100129534 Gene

Additional Disease Information for LOC100129534

No disorders were found for LOC100129534 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129534 Gene

Publications for LOC100129534 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100129534 Gene

Sources for LOC100129534 Gene

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