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Aliases for LOC100129484 Gene

Aliases for LOC100129484 Gene

  • Uncharacterized LOC100129484 3
  • Uncharacterized Protein LOC100129484 3
  • AC092171.3 5

External Ids for LOC100129484 Gene

Previous GeneCards Identifiers for LOC100129484 Gene

  • GC07U902177
  • GC07M005434
  • GC07M005511

Summaries for LOC100129484 Gene

GeneCards Summary for LOC100129484 Gene

LOC100129484 (Uncharacterized LOC100129484) is a Protein Coding gene.

Additional gene information for LOC100129484 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129484 Gene

Genomics for LOC100129484 Gene

GeneHancer (GH) Regulatory Elements for LOC100129484 Gene

Promoters and enhancers for LOC100129484 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J005431 Enhancer 0.9 ENCODE dbSUPER 650.7 -0.8 -760 0.3 HDGF MXI1 PKNOX1 ARNT ZSCAN4 CDC5L POLR2A NCOR1 VEZF1 IKZF2 LOC100129484 TNRC18 GC07P005444 FBXL18
GH07J005432 Enhancer 0.7 FANTOM5 650.7 -1.2 -1206 0.4 HDGF ZNF282 MXI1 ZSCAN4 DPF2 CDC5L ZNF121 POLR2A NCOR1 ZNF184 LOC100129484 GC07P005444 FBXL18
GH07J005494 Enhancer 1.1 Ensembl ENCODE 11.6 -64.4 -64388 2.4 CLOCK ATF1 ARID4B SIN3A ZNF2 ZNF48 YY1 ZNF213 ARID2 ZNF207 MIR589 TNRC18 ACTB AP5Z1 LOC100129484 FBXL18 GC07M005483 GC07P005444
GH07J005665 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.7 -234.5 -234478 0.6 CTCF SAP130 ARNT ARID4B RAD21 CC2D1A ARID2 ZNF143 SMC3 RCOR1 ACTB FSCN1 FBXL18 MIR589 TNRC18 LOC100129484 RNF216-IT1 RNF216
GH07J005666 Enhancer 1 Ensembl ENCODE dbSUPER 10.7 -236.4 -236437 1.4 SOX6 CEBPB REST EP300 NR2F2 CTBP1 POLR2A IKZF1 RCOR1 CHD2 ACTB FBXL18 MIR589 FSCN1 TNRC18 LOC100129484 RNF216-IT1 RNF216
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129484 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129484 gene promoter:
  • E2F-1
  • E2F
  • PPAR-gamma2
  • E2F-2
  • E2F-3a
  • E2F-4
  • E2F-5
  • COMP1
  • CBF(2)
  • CBF-A

Genomic Locations for LOC100129484 Gene

Genomic Locations for LOC100129484 Gene
chr7:5,426,277-5,431,023
(GRCh38/hg38)
Size:
4,747 bases
Orientation:
Minus strand
chr7:5,465,587-5,468,950
(GRCh37/hg19)
Size:
3,364 bases
Orientation:
Minus strand

Genomic View for LOC100129484 Gene

Genes around LOC100129484 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129484 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129484 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129484 Gene

Proteins for LOC100129484 Gene

Post-translational modifications for LOC100129484 Gene

No Post-translational modifications

Other Protein References for LOC100129484 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100129484 Gene

Domains & Families for LOC100129484 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129484 Gene

Function for LOC100129484 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129484 Gene

Localization for LOC100129484 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129484 Gene

Pathways & Interactions for LOC100129484 Gene

SuperPathways for LOC100129484 Gene

No Data Available

Interacting Proteins for LOC100129484 Gene

Gene Ontology (GO) - Biological Process for LOC100129484 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129484 Gene

Drugs & Compounds for LOC100129484 Gene

No Compound Related Data Available

Transcripts for LOC100129484 Gene

mRNA/cDNA for LOC100129484 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100129484 Gene

Uncharacterized LOC100129484:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129484 Gene

No ASD Table

Relevant External Links for LOC100129484 Gene

GeneLoc Exon Structure for
LOC100129484

Expression for LOC100129484 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129484 Gene

SOURCE GeneReport for Unigene cluster for LOC100129484 Gene:

Hs.147507
genes like me logo Genes that share expression patterns with LOC100129484: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129484 Gene

Orthologs for LOC100129484 Gene

Evolution for LOC100129484 Gene

ENSEMBL:
Gene Tree for LOC100129484 (if available)
TreeFam:
Gene Tree for LOC100129484 (if available)

No data available for Orthologs for LOC100129484 Gene

Paralogs for LOC100129484 Gene

No data available for Paralogs for LOC100129484 Gene

Variants for LOC100129484 Gene

Sequence variations from dbSNP and Humsavar for LOC100129484 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000968482 -- 5,428,166(-) G/T non_coding_transcript_variant
rs1001155593 -- 5,425,952(-) C/T downstream_transcript_variant
rs1001248823 -- 5,426,075(-) C/T downstream_transcript_variant
rs1001582837 -- 5,426,379(-) A/C non_coding_transcript_variant
rs1001630343 -- 5,426,535(-) T/A non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129484 Gene

Disorders for LOC100129484 Gene

Additional Disease Information for LOC100129484

No disorders were found for LOC100129484 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129484 Gene

Publications for LOC100129484 Gene

No publications were found for LOC100129484 Gene.

Products for LOC100129484 Gene

Sources for LOC100129484 Gene

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