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Aliases for LOC100129478 Gene

Aliases for LOC100129478 Gene

  • Chromosome 4 Open Reading Frame 46 Pseudogene 3
  • Z69890.1 5

External Ids for LOC100129478 Gene

Previous GeneCards Identifiers for LOC100129478 Gene

  • GC16P000233
  • GC16P000220
  • GC16P000280
  • GC16P000282
  • GC16P000296
  • GC16P000309
  • GC16P000317
  • GC16P000327
  • GC16P000348
  • GC16P000345
  • GC16P000372
  • GC16P000404
  • GC16P000427

Summaries for LOC100129478 Gene

GeneCards Summary for LOC100129478 Gene

LOC100129478 (Chromosome 4 Open Reading Frame 46 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129478 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129478 Gene

Genomics for LOC100129478 Gene

GeneHancer (GH) Regulatory Elements for LOC100129478 Gene

Promoters and enhancers for LOC100129478 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J000323 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +95.3 95348 5.3 PKNOX1 CLOCK ARNT NEUROD1 SIN3A FEZF1 ZNF2 YY1 ZNF766 ZNF213 LUC7L WDR90 ENSG00000228779 JMJD8 RHOT2 UBE2I ENSG00000261505 WDR24 ENSG00000262528 FAM234A
GH16J000252 Enhancer 1.2 Ensembl ENCODE dbSUPER 12.4 +21.7 21720 1.6 HDGF HDAC1 ARNT NFRKB ZBTB40 EGR1 IKZF2 RUNX3 ZBTB2 ZEB2 PIR53440 LOC100129478 LUC7L FAM234A HBM HBZ ARHGDIG ENSG00000269881 GC16P000135
GH16J000253 Promoter/Enhancer 1.1 EPDnew ENCODE dbSUPER 12.4 +23.0 22999 0.8 BCOR MLLT1 PIR53440 FAM234A HBZ LOC100129478 LUC7L HBM ENSG00000269881
GH16J000144 Enhancer 1.1 FANTOM5 dbSUPER 11.7 -87.9 -87928 0.3 SMAD1 ARNT TCF12 ZNF766 GATA2 NCOA1 ZNF592 MBD2 SMARCA4 MYNN HBZ HBM LOC100129478 LUC7L FAM234A HBQ1 NHLRC4 GC16M000144 GC16P000135
GH16J000143 Enhancer 0.9 ENCODE dbSUPER 11.7 -87.5 -87507 0.2 BRD4 TFAP4 ZNF644 POLR2A VEZF1 EGR2 ZNF639 MTA2 ZBTB11 NRF1 HBZ LOC100129478 LUC7L FAM234A NPRL3 GC16M000144 GC16P000135
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129478 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129478 gene promoter:
  • CUTL1
  • MEF-2A
  • RSRFC4
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c
  • aMEF-2
  • Lmo2
  • AML1a
  • HNF-3beta

Genomic Locations for LOC100129478 Gene

Genomic Locations for LOC100129478 Gene
chr16:231,084-232,010
(GRCh38/hg38)
Size:
927 bases
Orientation:
Plus strand
chr16:281,083-282,009
(GRCh37/hg19)
Size:
927 bases
Orientation:
Plus strand

Genomic View for LOC100129478 Gene

Genes around LOC100129478 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129478 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129478 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129478 Gene

Proteins for LOC100129478 Gene

Post-translational modifications for LOC100129478 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129478 Gene

Domains & Families for LOC100129478 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129478 Gene

Function for LOC100129478 Gene

Phenotypes From GWAS Catalog for LOC100129478 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129478 Gene

Localization for LOC100129478 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129478 Gene

Pathways & Interactions for LOC100129478 Gene

SuperPathways for LOC100129478 Gene

No Data Available

Interacting Proteins for LOC100129478 Gene

Gene Ontology (GO) - Biological Process for LOC100129478 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129478 Gene

Drugs & Compounds for LOC100129478 Gene

No Compound Related Data Available

Transcripts for LOC100129478 Gene

mRNA/cDNA for LOC100129478 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129478 Gene

No ASD Table

Relevant External Links for LOC100129478 Gene

GeneLoc Exon Structure for
LOC100129478

Expression for LOC100129478 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129478 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129478 Gene

This gene is overexpressed in Testis (x9.6).
genes like me logo Genes that share expression patterns with LOC100129478: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129478 Gene

Orthologs for LOC100129478 Gene

Evolution for LOC100129478 Gene

ENSEMBL:
Gene Tree for LOC100129478 (if available)
TreeFam:
Gene Tree for LOC100129478 (if available)

No data available for Orthologs for LOC100129478 Gene

Paralogs for LOC100129478 Gene

No data available for Paralogs for LOC100129478 Gene

Variants for LOC100129478 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129478 Gene

Disorders for LOC100129478 Gene

No disorders were found for LOC100129478 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129478 Gene

Publications for LOC100129478 Gene

No publications were found for LOC100129478 Gene.

Products for LOC100129478 Gene

Sources for LOC100129478 Gene

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