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Aliases for LOC100129457 Gene

Subcategory (RNA class) for LOC100129457 Gene

lncRNA

Aliases for LOC100129457 Gene

  • Coiled-Coil Domain Containing 86 Pseudogene 3
  • AC126915.1 5

External Ids for LOC100129457 Gene

ORGUL Members for LOC100129457 Gene

Previous GeneCards Identifiers for LOC100129457 Gene

  • GC05U900907
  • GC05P178199
  • GC05P178267

Summaries for LOC100129457 Gene

GeneCards Summary for LOC100129457 Gene

LOC100129457 (Coiled-Coil Domain Containing 86 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129457 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129457 Gene

Genomics for LOC100129457 Gene

GeneHancer (GH) Regulatory Elements for LOC100129457 Gene

Promoters and enhancers for LOC100129457 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J178839 Enhancer 0.7 ENCODE 650.7 -0.6 -622 0.2 SIX4 CTCF ESRRA NFIB SIN3A RAD21 CTBP1 GATA3 ARID2 HSF1 PIR56674 PIR49034 LOC100129457 GC05P178850 GC05P178839 AACSP1 ZNF354B GRM6 CLK4 LOC101928445
GH05J179619 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 14.6 +782.2 782176 6.1 CLOCK MLX FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 HNRNPH1 MAML1 ZNF879 MRNIP RUFY1 ZNF354C ZFP2 GRM6 LOC100996419 ENSG00000254035
GH05J178624 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 14.6 -214.1 -214065 3.8 HDGF ARID4B SIN3A FEZF1 ZNF2 YY1 POLR2B ZNF766 ZNF213 E2F8 CLK4 ZNF354B ZNF354C LOC100129457 GMCL2 LOC100289470 LOC105377753 ENSG00000250674 LOC105377752 OR1X5P
GH05J179817 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 14.6 +980.5 980462 6.5 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 ZNF143 SQSTM1 MRNIP MAML1 HNRNPH1 ZNF354C ZNF879 CNOT6 TBC1D9B RUFY1 LOC100502572
GH05J178229 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 14.6 -608.2 -608230 3.8 FOXA2 SIN3A DMAP1 YY1 ZNF766 ZNF143 SP3 SP5 KAT8 ZSCAN16 PHYKPL PIR36838 GMCL2 LOC105377753 OR1X5P LOC105377752 LOC100129457
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129457 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129457 Gene

Genomic Locations for LOC100129457 Gene
chr5:178,840,097-178,841,136
(GRCh38/hg38)
Size:
1,040 bases
Orientation:
Plus strand
chr5:178,267,098-178,268,137
(GRCh37/hg19)
Size:
1,040 bases
Orientation:
Plus strand

Genomic View for LOC100129457 Gene

Genes around LOC100129457 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129457 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129457 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129457 Gene

Proteins for LOC100129457 Gene

Post-translational modifications for LOC100129457 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129457 Gene

Domains & Families for LOC100129457 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129457 Gene

Function for LOC100129457 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129457 Gene

Localization for LOC100129457 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129457 Gene

Pathways & Interactions for LOC100129457 Gene

SuperPathways for LOC100129457 Gene

No Data Available

Interacting Proteins for LOC100129457 Gene

Gene Ontology (GO) - Biological Process for LOC100129457 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129457 Gene

Drugs & Compounds for LOC100129457 Gene

No Compound Related Data Available

Transcripts for LOC100129457 Gene

mRNA/cDNA for LOC100129457 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129457 Gene

No ASD Table

Relevant External Links for LOC100129457 Gene

GeneLoc Exon Structure for
LOC100129457

Expression for LOC100129457 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129457 Gene

genes like me logo Genes that share expression patterns with LOC100129457: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129457 Gene

Orthologs for LOC100129457 Gene

Evolution for LOC100129457 Gene

ENSEMBL:
Gene Tree for LOC100129457 (if available)
TreeFam:
Gene Tree for LOC100129457 (if available)

No data available for Orthologs for LOC100129457 Gene

Paralogs for LOC100129457 Gene

No data available for Paralogs for LOC100129457 Gene

Variants for LOC100129457 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129457 Gene

Disorders for LOC100129457 Gene

No disorders were found for LOC100129457 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129457 Gene

Publications for LOC100129457 Gene

No publications were found for LOC100129457 Gene.

Products for LOC100129457 Gene

Sources for LOC100129457 Gene

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