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Aliases for LOC100129455 Gene

Subcategory (RNA class) for LOC100129455 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100129455 Gene

  • Uncharacterized LOC100129455 3

External Ids for LOC100129455 Gene

Previous GeneCards Identifiers for LOC100129455 Gene

  • GC02M176701
  • GC02M176994
  • GC02U902271

Summaries for LOC100129455 Gene

GeneCards Summary for LOC100129455 Gene

LOC100129455 (Uncharacterized LOC100129455) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129455 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129455 Gene

Genomics for LOC100129455 Gene

GeneHancer (GH) Regulatory Elements for LOC100129455 Gene

Promoters and enhancers for LOC100129455 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I176128 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.4 -5.2 -5159 13.3 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B ZNF213 E2F8 HOXD8 HOXD3 HOXD1 HAGLR ATF2 HOXD4 HOXD9 HAGLROS HOXD11 HOXD-AS2
GH02I176127 Enhancer 0.8 ENCODE dbSUPER 0.8 +2.4 2423 0.2 SCRT1 CTCF ZNF654 TRIM22 REST ZEB2 RAD21 SCRT2 ZNF143 SMC3 GC02M176128 HOXD9 LOC100129455 HOXD-AS2
GH02I176129 Enhancer 0.7 Ensembl dbSUPER 0.8 +2.1 2130 0.2 CTCF TRIM22 REST ZNF444 RAD21 EZH2 GC02M176128 HOXD8 LOC100129455 HOXD9 HOXD-AS2
GH02I176124 Enhancer 0.5 dbSUPER 0.4 +5.0 5034 0.3 ZFHX2 ZBTB48 SUZ12 MAFK EZH2 HOXD9 GC02M176128 LOC100129455 HOXD-AS2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129455 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129455 gene promoter:

Genomic Locations for LOC100129455 Gene

Genomic Locations for LOC100129455 Gene
chr2:176,124,296-176,129,631
(GRCh38/hg38)
Size:
5,336 bases
Orientation:
Minus strand

Genomic View for LOC100129455 Gene

Genes around LOC100129455 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129455 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129455 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129455 Gene

Proteins for LOC100129455 Gene

Post-translational modifications for LOC100129455 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129455 Gene

Domains & Families for LOC100129455 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129455 Gene

Function for LOC100129455 Gene

Phenotypes From GWAS Catalog for LOC100129455 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129455 Gene

Localization for LOC100129455 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129455 Gene

Pathways & Interactions for LOC100129455 Gene

SuperPathways for LOC100129455 Gene

No Data Available

Interacting Proteins for LOC100129455 Gene

Gene Ontology (GO) - Biological Process for LOC100129455 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129455 Gene

Drugs & Compounds for LOC100129455 Gene

No Compound Related Data Available

Transcripts for LOC100129455 Gene

mRNA/cDNA for LOC100129455 Gene

(1) Additional mRNA sequences :

Unigene Clusters for LOC100129455 Gene

Uncharacterized LOC100129455:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129455 Gene

No ASD Table

Relevant External Links for LOC100129455 Gene

GeneLoc Exon Structure for
LOC100129455

Expression for LOC100129455 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129455 Gene

mRNA expression in normal human tissues for LOC100129455 Gene

SOURCE GeneReport for Unigene cluster for LOC100129455 Gene:

Hs.636572
genes like me logo Genes that share expression patterns with LOC100129455: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129455 Gene

Orthologs for LOC100129455 Gene

No data available for Orthologs and Evolution for LOC100129455 Gene

Paralogs for LOC100129455 Gene

No data available for Paralogs for LOC100129455 Gene

Variants for LOC100129455 Gene

Sequence variations from dbSNP and Humsavar for LOC100129455 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001383013 -- 176,130,269(-) G/C/T upstream_transcript_variant
rs1002199988 -- 176,130,834(-) G/A upstream_transcript_variant
rs1002420999 -- 176,129,922(-) T/A/C upstream_transcript_variant
rs1003106316 -- 176,127,549(-) A/G non_coding_transcript_variant
rs1003439768 -- 176,129,530(-) A/C/G non_coding_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129455 Gene

Disorders for LOC100129455 Gene

Additional Disease Information for LOC100129455

No disorders were found for LOC100129455 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129455 Gene

Publications for LOC100129455 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100129455 Gene

Sources for LOC100129455 Gene

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