Aliases for LOC100129352 Gene

Aliases for LOC100129352 Gene

  • Protein PAT1 Homolog 1-Like 3

External Ids for LOC100129352 Gene

Previous GeneCards Identifiers for LOC100129352 Gene

  • GC09U900995
  • GC09P130245
  • GC09P131208
  • GC09P128446
  • GC09P128447

Summaries for LOC100129352 Gene

GeneCards Summary for LOC100129352 Gene

LOC100129352 (Protein PAT1 Homolog 1-Like) is a Pseudogene.

Additional gene information for LOC100129352 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129352 Gene

Genomics for LOC100129352 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129352 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J128446 Enhancer 0.7 Ensembl 250.7 +1.6 1626 0.2 IKZF1 TRIM25 ZNF316 NFE2 ZNF318 HDAC2 MAFG ATF4 RLF MEIS2 ENSG00000228510 LOC100129352 RF00017-7353 ENSG00000273186 ODF2 piR-61945-516 lnc-TRUB2-2 CERCAM RF00017-7358 MK280607-157
GH09J128447 Enhancer 0.8 Ensembl 0.7 +2.0 2026 0.2 NCOR1 ZNF592 NFIC HES1 BHLHE40 MBD2 ARNT NKRF TAL1 TRIM25 ENSG00000228510 LOC100129352 ODF2 piR-61945-516 lnc-TRUB2-2 CERCAM RF00017-7358 MK280607-157 MN298678-102
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129352 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100129352 Gene

Latest Assembly
chr9:128,444,475-128,446,632
(GRCh38/hg38)
Size:
2,158 bases
Orientation:
Plus strand

Previous Assembly
chr9:131,206,754-131,208,911
(GRCh37/hg19 by Entrez Gene)
Size:
2,158 bases
Orientation:
Plus strand

Genomic View for LOC100129352 Gene

Genes around LOC100129352 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129352 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129352 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129352 Gene

Proteins for LOC100129352 Gene

Post-translational modifications for LOC100129352 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129352 Gene

Domains & Families for LOC100129352 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129352 Gene

Function for LOC100129352 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129352 Gene

Localization for LOC100129352 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129352 Gene

Pathways & Interactions for LOC100129352 Gene

PathCards logo

SuperPathways for LOC100129352 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129352 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129352 Gene

Drugs & Compounds for LOC100129352 Gene

No Compound Related Data Available

Transcripts for LOC100129352 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129352 Gene

No ASD Table

Relevant External Links for LOC100129352 Gene

GeneLoc Exon Structure for
LOC100129352

No data available for mRNA/cDNA for LOC100129352 Gene

Expression for LOC100129352 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129352 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129352 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.2), Brain - Caudate (basal ganglia) (x4.7), Brain - Spinal cord (cervical c-1) (x4.7), Pituitary (x4.4), and Brain - Substantia nigra (x4.1).
genes like me logo Genes that share expression patterns with LOC100129352: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129352 Gene

Orthologs for LOC100129352 Gene

No data available for Orthologs and Evolution for LOC100129352 Gene

Paralogs for LOC100129352 Gene

No data available for Paralogs for LOC100129352 Gene

Variants for LOC100129352 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129352 Gene

Disorders for LOC100129352 Gene

No disorders were found for LOC100129352 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129352 Gene

Publications for LOC100129352 Gene

No publications were found for LOC100129352 Gene.

No data available for Mastermind for LOC100129352 Gene

Products for LOC100129352 Gene

Sources for LOC100129352 Gene