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Aliases for LOC100129352 Gene

Aliases for LOC100129352 Gene

  • Protein PAT1 Homolog 1-Like 3
  • AL359091.2 5

External Ids for LOC100129352 Gene

Previous GeneCards Identifiers for LOC100129352 Gene

  • GC09U900995
  • GC09P130245
  • GC09P131208

Summaries for LOC100129352 Gene

GeneCards Summary for LOC100129352 Gene

LOC100129352 (Protein PAT1 Homolog 1-Like) is a Pseudogene.

Additional gene information for LOC100129352 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129352 Gene

Genomics for LOC100129352 Gene

GeneHancer (GH) Regulatory Elements for LOC100129352 Gene

Promoters and enhancers for LOC100129352 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J127962 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 20.6 -471.2 -471239 22.2 FEZF1 DMAP1 IRF4 YY1 E2F8 ZNF143 SP3 NFYC PPARGC1A MEF2D PIP5KL1 NAIF1 DPM2 LOC100129352 NUP188 ENSG00000227218 ZNF79 ODF2 GLE1 SLC25A25
GH09J129108 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.2 +665.9 665941 4.3 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B CRAT PTPA UBE2V1P4 ENSG00000272593 SPOUT1 ENSG00000234055 LOC101929270 LOC100129352 LOC101929314
GH09J127446 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.1 -995.1 -995057 7.5 CLOCK MLX DMAP1 IRF4 YY1 ZNF213 ZNF143 ZNF548 SP3 NFYC RPL12 SNORA65 LRSAM1 GC09M127449 ZNF79 NAIF1 LOC102723566 FPGS URM1 ENSG00000272696
GH09J128946 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.2 +503.1 503105 2.2 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZNF610 NUP188 DOLK SPOUT1 LOC101929314 ENSG00000234055 CIZ1 SH3GLB2 GOLGA2 NAIF1 PRRX2
GH09J127714 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.2 -729.1 -729100 2.7 HDGF PKNOX1 ARID4B SIN3A YY1 E2F8 ZNF207 ZNF143 FOS KLF13 TTC16 PTRH1 ZNF79 ODF2 GLE1 NAIF1 LOC102723566 LOC100129352 GARNL3 FPGS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129352 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129352 Gene

Genomic Locations for LOC100129352 Gene
chr9:128,444,587-128,446,631
(GRCh38/hg38)
Size:
2,045 bases
Orientation:
Plus strand
chr9:131,206,866-131,208,910
(GRCh37/hg19)
Size:
2,045 bases
Orientation:
Plus strand

Genomic View for LOC100129352 Gene

Genes around LOC100129352 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129352 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129352 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129352 Gene

Proteins for LOC100129352 Gene

Post-translational modifications for LOC100129352 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129352 Gene

Domains & Families for LOC100129352 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129352 Gene

Function for LOC100129352 Gene

Phenotypes From GWAS Catalog for LOC100129352 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129352 Gene

Localization for LOC100129352 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129352 Gene

Pathways & Interactions for LOC100129352 Gene

SuperPathways for LOC100129352 Gene

No Data Available

Interacting Proteins for LOC100129352 Gene

Gene Ontology (GO) - Biological Process for LOC100129352 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129352 Gene

Drugs & Compounds for LOC100129352 Gene

No Compound Related Data Available

Transcripts for LOC100129352 Gene

mRNA/cDNA for LOC100129352 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129352 Gene

No ASD Table

Relevant External Links for LOC100129352 Gene

GeneLoc Exon Structure for
LOC100129352

Expression for LOC100129352 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129352 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129352 Gene

This gene is overexpressed in Brain - Putamen (basal ganglia) (x5.2), Brain - Caudate (basal ganglia) (x4.7), Brain - Spinal cord (cervical c-1) (x4.7), Pituitary (x4.4), and Brain - Substantia nigra (x4.1).
genes like me logo Genes that share expression patterns with LOC100129352: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129352 Gene

Orthologs for LOC100129352 Gene

Evolution for LOC100129352 Gene

ENSEMBL:
Gene Tree for LOC100129352 (if available)
TreeFam:
Gene Tree for LOC100129352 (if available)

No data available for Orthologs for LOC100129352 Gene

Paralogs for LOC100129352 Gene

No data available for Paralogs for LOC100129352 Gene

Variants for LOC100129352 Gene

Variation tolerance for LOC100129352 Gene

Gene Damage Index Score: 11.89; 93.52% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC100129352 Gene

Disorders for LOC100129352 Gene

No disorders were found for LOC100129352 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129352 Gene

Publications for LOC100129352 Gene

No publications were found for LOC100129352 Gene.

Products for LOC100129352 Gene

Sources for LOC100129352 Gene

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