Aliases for LOC100129316 Gene
Subcategory (RNA class) for LOC100129316 Gene
ncRNA
Quality Score for this RNA gene is
1
Aliases for LOC100129316 Gene
- Uncharacterized LOC100129316 3
External Ids for LOC100129316 Gene
- Entrez Gene: 100129316
Previous GeneCards Identifiers for LOC100129316 Gene
- GC09U901174
- GC09M092876
- GC09M093826
Summaries for LOC100129316 Gene
GeneCards Summary for LOC100129316 Gene
LOC100129316 (Uncharacterized LOC100129316) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC100129316 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129316 Gene
Genomics for LOC100129316 Gene
GeneHancer (GH) Regulatory Elements for LOC100129316 Gene
Promoters and enhancers for LOC100129316 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH09I091073 | Enhancer | 0.5 | ENCODE dbSUPER | 550.8 | +1.9 | 1854 | 0.1 | RFX1 | GC09M091073 LOC100129316 LOC105376146 NFIL3 LOC105376144 | |
| GH09I091070 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE dbSUPER | 0.8 | +3.1 | 3121 | 2.4 | FOXA2 ARID4B ZNF48 ETS1 SLC30A9 ELK1 FOS SP5 NFYC JUNB | LOC105376146 NFIL3 GC09M091073 LOC100129316 LOC105376144 | |
| GH09I091098 | Enhancer | 1.5 | FANTOM5 Ensembl ENCODE | 0.3 | -25.4 | -25426 | 3.9 | FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS ZNF263 | NFIL3 LOC105376146 ENSG00000229694 SYK LINC00484 LOC100129316 | |
| GH09I091089 | Enhancer | 0.6 | ENCODE | 0.4 | -14.9 | -14865 | 1.4 | GATAD2A CTCF FOXA3 REST RAD21 RARA TGIF2 SSRP1 SMC3 | LOC105376146 NFIL3 AUH ENSG00000228216 LOC100129316 LINC00484 | |
| GH09I091085 | Enhancer | 0.2 | ENCODE | 0.4 | -10.0 | -9979 | 0.1 | LOC105376146 NFIL3 LOC100129316 LINC00484 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LOC100129316 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LOC100129316 Gene
Genomic Locations for LOC100129316 Gene
- chr9:91,063,294-91,075,132
- (GRCh38/hg38)
- Size:
- 11,839 bases
- Orientation:
- Minus strand
- chr9:93,825,576-93,837,414
- (GRCh37/hg19)
Genomic View for LOC100129316 Gene
Genes around LOC100129316 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 9q22.2 by Entrez Gene
LOC100129316 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LOC100129316 Gene
Proteins for LOC100129316 Gene
Post-translational modifications for LOC100129316 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LOC100129316
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100129316
- Origene Custom Protein Services for LOC100129316
- Search GeneTex for Proteins for LOC100129316
No data available for DME Specific Peptides for LOC100129316 Gene
Domains & Families for LOC100129316 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129316 Gene
Function for LOC100129316 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
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-
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CRISPR Products
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miRNA Products
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Inhibitory RNA Products
- Search ViGene Biosciences for LOC100129316
Clone Products
- GenScript: Custom all cDNA clones Services for LOC100129316
- VectorBuilder custom plasmid, inducible vectors for LOC100129316
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100129316
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129316 Gene
Localization for LOC100129316 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129316 Gene
Transcripts for LOC100129316 Gene
mRNA/cDNA for LOC100129316 Gene
- (2) Additional mRNA sequences :
Unigene Clusters for LOC100129316 Gene
CRISPR Products
- Browse CRISPR knockouts for LOC100129316
miRNA Products
- Search ViGene Biosciences for LOC100129316
Inhibitory RNA Products
- Search ViGene Biosciences for LOC100129316
Clone Products
- GenScript: Custom all cDNA clones Services for LOC100129316
- VectorBuilder custom plasmid, inducible vectors for LOC100129316
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100129316
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for LOC100129316 Gene
- GeneLoc Exon Structure for
- LOC100129316
Expression for LOC100129316 Gene
mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129316 Gene
SOURCE GeneReport for Unigene cluster for LOC100129316 Gene:
Hs.458154
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129316 Gene
Orthologs for LOC100129316 Gene
No data available for Orthologs and Evolution for LOC100129316 Gene
Paralogs for LOC100129316 Gene
No data available for Paralogs for LOC100129316 Gene
Variants for LOC100129316 Gene
| SNP ID | Clin | Chr 09 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000039821 | -- | 91,071,845(-) | A/G | intron_variant | |
| rs1000051566 | -- | 91,073,536(-) | G/A | non_coding_transcript_variant | |
| rs1000100487 | -- | 91,073,971(-) | A/C/T | non_coding_transcript_variant | |
| rs1000208653 | -- | 91,067,916(-) | G/C | intron_variant | |
| rs1000336854 | -- | 91,066,776(-) | C/T | non_coding_transcript_variant |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv2666630 | CNV | deletion | 23128226 |
| esv3621048 | CNV | gain | 21293372 |
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129316 Gene
Disorders for LOC100129316 Gene
Additional Disease Information for LOC100129316
No disorders were found for LOC100129316 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129316 Gene
Publications for LOC100129316 Gene
No publications were found for LOC100129316 Gene.
Products for LOC100129316 Gene
- Browse R&D Systems for Antibodies
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- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC100129316
- Origene Custom Protein Services for LOC100129316
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- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LOC100129316
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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- Cloud-Clone Corp. disease models service
- Browse cDNA clones at Cloud-Clone Corp.
- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC100129316
- VectorBuilder custom plasmid, inducible vectors for LOC100129316
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC100129316
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for LOC100129316
- Search GeneTex for Proteins for LOC100129316
- Search ViGene Biosciences for LOC100129316
Sources for LOC100129316 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems