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Aliases for LOC100129316 Gene

Subcategory (RNA class) for LOC100129316 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100129316 Gene

  • Uncharacterized LOC100129316 3

External Ids for LOC100129316 Gene

Previous GeneCards Identifiers for LOC100129316 Gene

  • GC09U901174
  • GC09M092876
  • GC09M093826

Summaries for LOC100129316 Gene

GeneCards Summary for LOC100129316 Gene

LOC100129316 (Uncharacterized LOC100129316) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129316 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129316 Gene

Genomics for LOC100129316 Gene

GeneHancer (GH) Regulatory Elements for LOC100129316 Gene

Promoters and enhancers for LOC100129316 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I091073 Enhancer 0.5 ENCODE dbSUPER 550.8 +1.9 1854 0.1 RFX1 GC09M091073 LOC100129316 LOC105376146 NFIL3 LOC105376144
GH09I091070 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.8 +3.1 3121 2.4 FOXA2 ARID4B ZNF48 ETS1 SLC30A9 ELK1 FOS SP5 NFYC JUNB LOC105376146 NFIL3 GC09M091073 LOC100129316 LOC105376144
GH09I091098 Enhancer 1.5 FANTOM5 Ensembl ENCODE 0.3 -25.4 -25426 3.9 FOXA2 MLX ARID4B FEZF1 DMAP1 ZNF2 YY1 SLC30A9 FOS ZNF263 NFIL3 LOC105376146 ENSG00000229694 SYK LINC00484 LOC100129316
GH09I091089 Enhancer 0.6 ENCODE 0.4 -14.9 -14865 1.4 GATAD2A CTCF FOXA3 REST RAD21 RARA TGIF2 SSRP1 SMC3 LOC105376146 NFIL3 AUH ENSG00000228216 LOC100129316 LINC00484
GH09I091085 Enhancer 0.2 ENCODE 0.4 -10.0 -9979 0.1 LOC105376146 NFIL3 LOC100129316 LINC00484
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129316 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129316 Gene

Genomic Locations for LOC100129316 Gene
chr9:91,063,294-91,075,132
(GRCh38/hg38)
Size:
11,839 bases
Orientation:
Minus strand
chr9:93,825,576-93,837,414
(GRCh37/hg19)

Genomic View for LOC100129316 Gene

Genes around LOC100129316 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129316 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129316 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129316 Gene

Proteins for LOC100129316 Gene

Post-translational modifications for LOC100129316 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129316 Gene

Domains & Families for LOC100129316 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129316 Gene

Function for LOC100129316 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129316 Gene

Localization for LOC100129316 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129316 Gene

Pathways & Interactions for LOC100129316 Gene

SuperPathways for LOC100129316 Gene

No Data Available

Interacting Proteins for LOC100129316 Gene

Gene Ontology (GO) - Biological Process for LOC100129316 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129316 Gene

Drugs & Compounds for LOC100129316 Gene

No Compound Related Data Available

Transcripts for LOC100129316 Gene

mRNA/cDNA for LOC100129316 Gene

(2) Additional mRNA sequences :

Unigene Clusters for LOC100129316 Gene

Uncharacterized LOC100129316:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129316 Gene

No ASD Table

Relevant External Links for LOC100129316 Gene

GeneLoc Exon Structure for
LOC100129316

Expression for LOC100129316 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129316 Gene

mRNA expression in normal human tissues for LOC100129316 Gene

SOURCE GeneReport for Unigene cluster for LOC100129316 Gene:

Hs.458154
genes like me logo Genes that share expression patterns with LOC100129316: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129316 Gene

Orthologs for LOC100129316 Gene

No data available for Orthologs and Evolution for LOC100129316 Gene

Paralogs for LOC100129316 Gene

No data available for Paralogs for LOC100129316 Gene

Variants for LOC100129316 Gene

Sequence variations from dbSNP and Humsavar for LOC100129316 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000039821 -- 91,071,845(-) A/G intron_variant
rs1000051566 -- 91,073,536(-) G/A non_coding_transcript_variant
rs1000100487 -- 91,073,971(-) A/C/T non_coding_transcript_variant
rs1000208653 -- 91,067,916(-) G/C intron_variant
rs1000336854 -- 91,066,776(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129316 Gene

Variant ID Type Subtype PubMed ID
esv2666630 CNV deletion 23128226
esv3621048 CNV gain 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129316 Gene

Disorders for LOC100129316 Gene

Additional Disease Information for LOC100129316

No disorders were found for LOC100129316 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129316 Gene

Publications for LOC100129316 Gene

No publications were found for LOC100129316 Gene.

Products for LOC100129316 Gene

Sources for LOC100129316 Gene

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