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Aliases for LOC100129307 Gene

Aliases for LOC100129307 Gene

  • Putative UPF0607 Protein ENSP00000383144 3 3
  • UPF0607 Protein ENSP00000383144-Like 3

External Ids for LOC100129307 Gene

Previous GeneCards Identifiers for LOC100129307 Gene

  • GC13M077134
  • GC13M078235

Summaries for LOC100129307 Gene

GeneCards Summary for LOC100129307 Gene

LOC100129307 (Putative UPF0607 Protein ENSP00000383144) is a Protein Coding gene.

Additional gene information for LOC100129307 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129307 Gene

Genomics for LOC100129307 Gene

GeneHancer (GH) Regulatory Elements for LOC100129307 Gene

Promoters and enhancers for LOC100129307 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13J077696 Promoter/Enhancer 1.4 Ensembl ENCODE 0.3 -35.0 -35028 3.4 HDGF PKNOX1 ARNT SIN3A FEZF1 BRCA1 YY1 GLIS2 ZNF143 RUNX3 SLAIN1 MIR3665 RPL31P54 LOC100129307
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129307 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129307 gene promoter:
  • HSF1short
  • HSF1 (long)
  • FOXO1a
  • FOXO1
  • GR-alpha
  • GR
  • Lmo2
  • FOXF2
  • FOXD1
  • SRY

Genomic Locations for LOC100129307 Gene

Genomic Locations for LOC100129307 Gene
chr13:77,661,374-77,662,803
(GRCh38/hg38)
Size:
1,430 bases
Orientation:
Minus strand
chr13:78,235,511-78,236,536
(GRCh37/hg19)
Size:
1,026 bases
Orientation:
Minus strand

Genomic View for LOC100129307 Gene

Genes around LOC100129307 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129307 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129307 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129307 Gene

Proteins for LOC100129307 Gene

Post-translational modifications for LOC100129307 Gene

No Post-translational modifications

Other Protein References for LOC100129307 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC100129307 Gene

Domains & Families for LOC100129307 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129307 Gene

Function for LOC100129307 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129307 Gene

Localization for LOC100129307 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129307 Gene

Pathways & Interactions for LOC100129307 Gene

SuperPathways for LOC100129307 Gene

No Data Available

Interacting Proteins for LOC100129307 Gene

Gene Ontology (GO) - Biological Process for LOC100129307 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129307 Gene

Drugs & Compounds for LOC100129307 Gene

No Compound Related Data Available

Transcripts for LOC100129307 Gene

mRNA/cDNA for LOC100129307 Gene

(1) REFSEQ mRNAs :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129307 Gene

No ASD Table

Relevant External Links for LOC100129307 Gene

GeneLoc Exon Structure for
LOC100129307

Expression for LOC100129307 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129307 Gene

Orthologs for LOC100129307 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC100129307 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100609847 33
  • 94.87 (n)
Species where no ortholog for LOC100129307 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for LOC100129307 Gene

Paralogs for LOC100129307 Gene

No data available for Paralogs for LOC100129307 Gene

Variants for LOC100129307 Gene

Sequence variations from dbSNP and Humsavar for LOC100129307 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1002036497 -- 77,663,748(-) A/C upstream_transcript_variant
rs1002492238 -- 77,663,271(-) A/G upstream_transcript_variant
rs1003450044 -- 77,662,533(-) G/T coding_sequence_variant, missense_variant
rs1004048212 -- 77,661,525(-) C/A coding_sequence_variant, missense_variant
rs1004174632 -- 77,664,268(-) T/C upstream_transcript_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129307 Gene

Disorders for LOC100129307 Gene

Additional Disease Information for LOC100129307

No disorders were found for LOC100129307 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129307 Gene

Publications for LOC100129307 Gene

  1. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A … Ross MT (Nature 2004) 3 58

Products for LOC100129307 Gene

Sources for LOC100129307 Gene

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