Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129291 Gene

Aliases for LOC100129291 Gene

  • Chromosome X Open Reading Frame 49 Pseudogene 3
  • BX276092.7 5

External Ids for LOC100129291 Gene

Previous GeneCards Identifiers for LOC100129291 Gene

  • GC0XP070901
  • GC0XM070799
  • GC0XM070883
  • GC0XM070884

Summaries for LOC100129291 Gene

GeneCards Summary for LOC100129291 Gene

LOC100129291 (Chromosome X Open Reading Frame 49 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129291 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129291 Gene

Genomics for LOC100129291 Gene

GeneHancer (GH) Regulatory Elements for LOC100129291 Gene

Promoters and enhancers for LOC100129291 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI071636 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +29.3 29320 2.6 SCRT1 RFX1 JUNB BATF SCRT2 NFE2 PRDM10 ATF7 EMSY GC0XM071626 LOC100129291
GH0XI071652 Enhancer 0.6 ENCODE 0.4 +14.1 14119 0.1 CTCF ZNF654 ZNF362 MAX TRIM22 REST ZNF2 RAD21 ZNF629 ZNF143 LOC100129291 GC0XM071626
GH0XI071629 Enhancer 0.8 FANTOM5 ENCODE 0.3 +37.1 37100 0.2 IKZF1 EBF1 ELF1 DPF2 BCLAF1 IKZF2 SPI1 CXCR3 GC0XM071626 LOC100129291
GH0XI071632 Enhancer 0.6 ENCODE 0.3 +33.5 33546 1.7 NR2F1 JUNB EBF1 BATF ATF2 ZNF548 ATF7 IKZF2 TAF1 LOC100420758 MED12 NONO OGT ENSG00000229601 GC0XM071626 LOC100129291
GH0XI071626 Enhancer 0.6 ENCODE dbSUPER 0.3 +40.1 40056 1.2 STAT1 PRDM10 GC0XM071626 LOC100129291
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129291 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129291 gene promoter:

Genomic Locations for LOC100129291 Gene

Genomic Locations for LOC100129291 Gene
chrX:71,662,995-71,666,785
(GRCh38/hg38)
Size:
3,791 bases
Orientation:
Minus strand
chrX:70,882,841-70,886,617
(GRCh37/hg19)

Genomic View for LOC100129291 Gene

Genes around LOC100129291 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129291 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129291 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129291 Gene

Proteins for LOC100129291 Gene

Post-translational modifications for LOC100129291 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129291 Gene

Domains & Families for LOC100129291 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129291 Gene

Function for LOC100129291 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129291 Gene

Localization for LOC100129291 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129291 Gene

Pathways & Interactions for LOC100129291 Gene

SuperPathways for LOC100129291 Gene

No Data Available

Interacting Proteins for LOC100129291 Gene

Gene Ontology (GO) - Biological Process for LOC100129291 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129291 Gene

Drugs & Compounds for LOC100129291 Gene

No Compound Related Data Available

Transcripts for LOC100129291 Gene

mRNA/cDNA for LOC100129291 Gene

(3) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129291 Gene

Uncharacterized LOC100129291:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129291 Gene

No ASD Table

Relevant External Links for LOC100129291 Gene

GeneLoc Exon Structure for
LOC100129291

Expression for LOC100129291 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129291 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129291 Gene

This gene is overexpressed in Testis (x35.0), Brain - Amygdala (x5.1), and Skin - Not Sun Exposed (Suprapubic) (x4.5).

SOURCE GeneReport for Unigene cluster for LOC100129291 Gene:

Hs.558667
genes like me logo Genes that share expression patterns with LOC100129291: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129291 Gene

Orthologs for LOC100129291 Gene

Evolution for LOC100129291 Gene

ENSEMBL:
Gene Tree for LOC100129291 (if available)
TreeFam:
Gene Tree for LOC100129291 (if available)

No data available for Orthologs for LOC100129291 Gene

Paralogs for LOC100129291 Gene

No data available for Paralogs for LOC100129291 Gene

Variants for LOC100129291 Gene

Sequence variations from dbSNP and Humsavar for LOC100129291 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000180715 -- 71,665,671(-) G/A non_coding_transcript_variant
rs1000473143 -- 71,667,955(-) G/T upstream_transcript_variant
rs1000527614 -- 71,663,854(-) C/T intron_variant
rs1001059194 -- 71,663,647(-) A/T intron_variant
rs1001300052 -- 71,663,789(-) A/G intron_variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129291 Gene

Disorders for LOC100129291 Gene

Additional Disease Information for LOC100129291

No disorders were found for LOC100129291 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129291 Gene

Publications for LOC100129291 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for LOC100129291 Gene

Sources for LOC100129291 Gene

Content
Loading form....