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Aliases for LOC100129276 Gene

Subcategory (RNA class) for LOC100129276 Gene

lncRNA

Aliases for LOC100129276 Gene

  • RNA Exonuclease 1 Homolog 3
  • AC073347.1 5

External Ids for LOC100129276 Gene

ORGUL Members for LOC100129276 Gene

Previous GeneCards Identifiers for LOC100129276 Gene

  • GC07U902000
  • GC07P055377
  • GC07P055411

Summaries for LOC100129276 Gene

GeneCards Summary for LOC100129276 Gene

LOC100129276 (RNA Exonuclease 1 Homolog) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129276 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129276 Gene

Genomics for LOC100129276 Gene

GeneHancer (GH) Regulatory Elements for LOC100129276 Gene

Promoters and enhancers for LOC100129276 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J055306 Enhancer 1.3 Ensembl ENCODE dbSUPER 17.2 -33.7 -33695 3.3 HDGF PKNOX1 SMAD1 STAT5A BMI1 BATF KLF5 IRF4 ZNF207 ATF7 LOC100129276 GC07M055309 CALM1P2
GH07J055364 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 8.8 +23.8 23825 3.4 HDGF PKNOX1 SMAD1 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ZNF766 LANCL2 CALM1P2 LOC100130121 SUMF2 LOC100420540 CICP12 LOC101409255 CCNJP1 SEPT14P24 ENSG00000203462
GH07J055324 Enhancer 0.4 ENCODE 29.3 -16.5 -16477 1.8 JUND POLR2A FOS LOC100129276 GC07M055309
GH07J055351 Enhancer 0.4 ENCODE 26.7 +10.0 9993 1.2 ZNF766 CEBPB LOC100129276 LANCL2
GH07J055545 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 4.7 +210.6 210562 15.6 HDGF PKNOX1 FOXA2 SIN3A IRF4 YY1 TCF12 ZNF143 ATF7 FOS VOPP1 GC07P055550 ENSG00000223475 LOC100129276 PIR50019
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129276 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129276 Gene

Genomic Locations for LOC100129276 Gene
chr7:55,342,316-55,344,958
(GRCh38/hg38)
Size:
2,643 bases
Orientation:
Plus strand
chr7:55,410,009-55,412,651
(GRCh37/hg19)
Size:
2,643 bases
Orientation:
Plus strand

Genomic View for LOC100129276 Gene

Genes around LOC100129276 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129276 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129276 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129276 Gene

Proteins for LOC100129276 Gene

Post-translational modifications for LOC100129276 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129276 Gene

Domains & Families for LOC100129276 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129276 Gene

Function for LOC100129276 Gene

Phenotypes From GWAS Catalog for LOC100129276 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129276 Gene

Localization for LOC100129276 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129276 Gene

Pathways & Interactions for LOC100129276 Gene

SuperPathways for LOC100129276 Gene

No Data Available

Interacting Proteins for LOC100129276 Gene

Gene Ontology (GO) - Biological Process for LOC100129276 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129276 Gene

Drugs & Compounds for LOC100129276 Gene

No Compound Related Data Available

Transcripts for LOC100129276 Gene

mRNA/cDNA for LOC100129276 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129276 Gene

No ASD Table

Relevant External Links for LOC100129276 Gene

GeneLoc Exon Structure for
LOC100129276

Expression for LOC100129276 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129276 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129276 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x23.8) and Testis (x21.7).
genes like me logo Genes that share expression patterns with LOC100129276: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129276 Gene

Orthologs for LOC100129276 Gene

Evolution for LOC100129276 Gene

ENSEMBL:
Gene Tree for LOC100129276 (if available)
TreeFam:
Gene Tree for LOC100129276 (if available)

No data available for Orthologs for LOC100129276 Gene

Paralogs for LOC100129276 Gene

No data available for Paralogs for LOC100129276 Gene

Variants for LOC100129276 Gene

Additional Variant Information for LOC100129276 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LOC100129276

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LOC100129276 Gene

Disorders for LOC100129276 Gene

No disorders were found for LOC100129276 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129276 Gene

Publications for LOC100129276 Gene

No publications were found for LOC100129276 Gene.

Products for LOC100129276 Gene

Sources for LOC100129276 Gene

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