Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129254 Gene

Aliases for LOC100129254 Gene

  • Chromosome 3 Open Reading Frame 38 Pseudogene 3
  • AC000077.1 5

External Ids for LOC100129254 Gene

Previous GeneCards Identifiers for LOC100129254 Gene

  • GC22U900481
  • GC22M017971

Summaries for LOC100129254 Gene

GeneCards Summary for LOC100129254 Gene

LOC100129254 (Chromosome 3 Open Reading Frame 38 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129254 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129254 Gene

Genomics for LOC100129254 Gene

GeneHancer (GH) Regulatory Elements for LOC100129254 Gene

Promoters and enhancers for LOC100129254 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I019632 Enhancer 0.8 ENCODE 550.8 +1.2 1221 0.2 HDGF HDAC1 RB1 ARNT SIN3A BMI1 RAD21 CBX5 CREM ZBTB2 GC22P019632 LOC100129254 SEPT5 CDC45 UFD1 GP1BB LINC00895
GH22I019642 Enhancer 1.2 Ensembl ENCODE 0.4 -10.5 -10451 2.1 HDGF PKNOX1 SMAD1 ATF1 ARNT TCF12 ZNF766 GATA2 ATF7 NCOA1 DGCR8 LOC100420177 TRMT2A SEPT5 GP1BB LINC01311 RPL8P5 LOC100129254 LOC100420103
GH22I019641 Enhancer 1.1 Ensembl ENCODE 0.4 -8.0 -7993 0.9 HDGF SMAD1 ATF1 E2F8 ZNF143 ATF7 NCOA1 REST ZNF592 MBD2 ENSG00000273300 TRMT2A RPL7AP70 MED15 RPL8P5 DGCR8 LOC100129254 LOC100420103
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129254 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129254 Gene

Genomic Locations for LOC100129254 Gene
chr22:19,630,429-19,633,574
(GRCh38/hg38)
Size:
3,146 bases
Orientation:
Minus strand
chr22:19,617,952-19,621,097
(GRCh37/hg19)

Genomic View for LOC100129254 Gene

Genes around LOC100129254 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129254 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129254 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129254 Gene

Proteins for LOC100129254 Gene

Post-translational modifications for LOC100129254 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129254 Gene

Domains & Families for LOC100129254 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129254 Gene

Function for LOC100129254 Gene

Phenotypes From GWAS Catalog for LOC100129254 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129254 Gene

Localization for LOC100129254 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129254 Gene

Pathways & Interactions for LOC100129254 Gene

SuperPathways for LOC100129254 Gene

No Data Available

Interacting Proteins for LOC100129254 Gene

Gene Ontology (GO) - Biological Process for LOC100129254 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129254 Gene

Drugs & Compounds for LOC100129254 Gene

No Compound Related Data Available

Transcripts for LOC100129254 Gene

mRNA/cDNA for LOC100129254 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129254 Gene

No ASD Table

Relevant External Links for LOC100129254 Gene

GeneLoc Exon Structure for
LOC100129254

Expression for LOC100129254 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129254 Gene

genes like me logo Genes that share expression patterns with LOC100129254: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129254 Gene

Orthologs for LOC100129254 Gene

Evolution for LOC100129254 Gene

ENSEMBL:
Gene Tree for LOC100129254 (if available)
TreeFam:
Gene Tree for LOC100129254 (if available)

No data available for Orthologs for LOC100129254 Gene

Paralogs for LOC100129254 Gene

No data available for Paralogs for LOC100129254 Gene

Variants for LOC100129254 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129254 Gene

Disorders for LOC100129254 Gene

No disorders were found for LOC100129254 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129254 Gene

Publications for LOC100129254 Gene

No publications were found for LOC100129254 Gene.

Products for LOC100129254 Gene

Sources for LOC100129254 Gene

Content
Loading form....