Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129215 Gene

Subcategory (RNA class) for LOC100129215 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129215 Gene

  • Uncharacterized LOC100129215 3
  • AC010536.1 5

External Ids for LOC100129215 Gene

Previous GeneCards Identifiers for LOC100129215 Gene

  • GC16U900864
  • GC16M086287
  • GC16M087727

Summaries for LOC100129215 Gene

GeneCards Summary for LOC100129215 Gene

LOC100129215 (Uncharacterized LOC100129215) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129215 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129215 Gene

Genomics for LOC100129215 Gene

GeneHancer (GH) Regulatory Elements for LOC100129215 Gene

Promoters and enhancers for LOC100129215 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J087777 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.7 -83.4 -83433 4.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 ZNF143 KLHDC4 LOC102724467 ZC3H18 BANP ENSG00000260121 LOC100129215 CTU2 ZCCHC14 ENSG00000260671 ENSG00000260177
GH16J087761 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.6 -68.1 -68081 5.2 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B KLHDC4 ENSG00000260671 LOC100129215 LOC105371399 LOC102724467
GH16J087722 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 12.3 -28.2 -28218 3.4 PKNOX1 SIN3A FEZF1 ZNF548 RUNX3 REST TSHZ1 ZNF488 ZNF592 ATF4 KLHDC4 ENSG00000260671 LOC100129215 ENSG00000260121 ZC3H18 C16orf95 ENSG00000260466 JPH3 FBXO31 ZCCHC14
GH16J087507 Enhancer 0.7 Ensembl 10.6 +188.5 188505 1.1 SOX13 IRF2 SAP130 ERF ZNF644 ZNF7 YY1 ZNF614 SCRT2 HNF4G JPH3 LOC100129215 PIR35253 LOC101928737
GH16J087700 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.6 -6.3 -6328 3.2 CTCF KLF1 EBF1 KLF14 RAD21 RELA ZFHX2 POLR2A EED ZNF143 KLHDC4 LOC100129215 ENSG00000260671
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129215 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129215 Gene

Genomic Locations for LOC100129215 Gene
chr16:87,693,537-87,696,147
(GRCh38/hg38)
Size:
2,611 bases
Orientation:
Minus strand
chr16:87,727,143-87,729,753
(GRCh37/hg19)
Size:
2,611 bases
Orientation:
Minus strand

Genomic View for LOC100129215 Gene

Genes around LOC100129215 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129215 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129215 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129215 Gene

Proteins for LOC100129215 Gene

Post-translational modifications for LOC100129215 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129215 Gene

Domains & Families for LOC100129215 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129215 Gene

Function for LOC100129215 Gene

Phenotypes From GWAS Catalog for LOC100129215 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129215 Gene

Localization for LOC100129215 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129215 Gene

Pathways & Interactions for LOC100129215 Gene

SuperPathways for LOC100129215 Gene

No Data Available

Interacting Proteins for LOC100129215 Gene

Gene Ontology (GO) - Biological Process for LOC100129215 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129215 Gene

Drugs & Compounds for LOC100129215 Gene

No Compound Related Data Available

Transcripts for LOC100129215 Gene

mRNA/cDNA for LOC100129215 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Unigene Clusters for LOC100129215 Gene

Uncharacterized LOC100129215:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129215 Gene

No ASD Table

Relevant External Links for LOC100129215 Gene

GeneLoc Exon Structure for
LOC100129215

Expression for LOC100129215 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129215 Gene

SOURCE GeneReport for Unigene cluster for LOC100129215 Gene:

Hs.678171
genes like me logo Genes that share expression patterns with LOC100129215: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129215 Gene

Orthologs for LOC100129215 Gene

Evolution for LOC100129215 Gene

ENSEMBL:
Gene Tree for LOC100129215 (if available)
TreeFam:
Gene Tree for LOC100129215 (if available)

No data available for Orthologs for LOC100129215 Gene

Paralogs for LOC100129215 Gene

No data available for Paralogs for LOC100129215 Gene

Variants for LOC100129215 Gene

Sequence variations from dbSNP and Humsavar for LOC100129215 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000753205 -- 87,695,619(-) G/A non_coding_transcript_variant
rs1000809875 -- 87,695,077(-) A/C non_coding_transcript_variant
rs1000843714 -- 87,698,076(-) C/A upstream_transcript_variant
rs1001249365 -- 87,695,993(-) G/A non_coding_transcript_variant
rs1001279340 -- 87,697,968(-) C/T upstream_transcript_variant

Variation tolerance for LOC100129215 Gene

Gene Damage Index Score: 3.54; 55.72% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC100129215 Gene

Disorders for LOC100129215 Gene

Additional Disease Information for LOC100129215

No disorders were found for LOC100129215 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129215 Gene

Publications for LOC100129215 Gene

No publications were found for LOC100129215 Gene.

Products for LOC100129215 Gene

Sources for LOC100129215 Gene

Content
Loading form....