Aliases for LOC100129215 Gene

Data sources for LOC100129215 Gene:

Subcategory (RNA class) for LOC100129215 Gene

lncRNA

Aliases for LOC100129215 Gene

External Ids for LOC100129215 Gene

Previous GeneCards Identifiers for LOC100129215 Gene

  • GC16U900864
  • GC16M086287
  • GC16M087727

Summaries for LOC100129215 Gene

GeneCards Summary for LOC100129215 Gene

LOC100129215 (Uncharacterized LOC100129215) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LOC100129215 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129215 Gene

Genomics for LOC100129215 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129215 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129215 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100129215 Gene

Latest Assembly
chr16:87,693,536-87,696,163
(GRCh38/hg38)
Size:
2,628 bases
Orientation:
Minus strand

Previous Assembly
chr16:87,727,144-87,729,753
(GRCh37/hg19 by Ensembl)
Size:
2,610 bases
Orientation:
Minus strand

Genomic View for LOC100129215 Gene

Genes around LOC100129215 on UCSC Golden Path with GeneCards custom track
LOC100129215 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LOC100129215 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129215 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129215 Gene

Proteins for LOC100129215 Gene

Post-translational modifications for LOC100129215 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129215 Gene

Domains & Families for LOC100129215 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129215 Gene

Function for LOC100129215 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129215 Gene

Localization for LOC100129215 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129215 Gene

Pathways & Interactions for LOC100129215 Gene

PathCards logo

SuperPathways for LOC100129215 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129215 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129215 Gene

Drugs & Compounds for LOC100129215 Gene

No Compound Related Data Available

Transcripts for LOC100129215 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LOC100129215 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007636D2_9606 lncRNA 2611 2

Ensembl: ENST00000538868 (view in UCSC) ,

LNCipedia: lnc-KLHDC4-2:3,

LOC100129215 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LOC100129215 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129215 Gene

No ASD Table

Relevant External Links for LOC100129215 Gene

GeneLoc Exon Structure for
LOC100129215

Expression for LOC100129215 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129215 Gene

SOURCE GeneReport for Unigene cluster for LOC100129215 Gene:

Hs.678171
genes like me logo Genes that share expression patterns with LOC100129215: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129215 Gene

Orthologs for LOC100129215 Gene

Evolution for LOC100129215 Gene

ENSEMBL:
Gene Tree for LOC100129215 (if available)
TreeFam:
Gene Tree for LOC100129215 (if available)

No data available for Orthologs for LOC100129215 Gene

Paralogs for LOC100129215 Gene

No data available for Paralogs for LOC100129215 Gene

Variants for LOC100129215 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LOC100129215 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Variation tolerance for LOC100129215 Gene

Gene Damage Index Score: 3.54; 55.72% of all genes are more intolerant (likely to be disease-causing)

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Additional Variant Information for LOC100129215 Gene

Disorders for LOC100129215 Gene

Additional Disease Information for LOC100129215

Open Targets Platform
Open Targets Platform

No disorders were found for LOC100129215 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129215 Gene

Publications for LOC100129215 Gene

No publications were found for LOC100129215 Gene.

No data available for Mastermind for LOC100129215 Gene

Products for LOC100129215 Gene

Sources for LOC100129215 Gene