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Aliases for LOC100129203 Gene

Subcategory (RNA class) for LOC100129203 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC100129203 Gene

  • Uncharacterized LOC100129203 3

External Ids for LOC100129203 Gene

Previous GeneCards Identifiers for LOC100129203 Gene

  • GC11U901053
  • GC11P094566
  • GC11P094927
  • GC11P094886
  • GC11P094965
  • GC11P095150

Summaries for LOC100129203 Gene

GeneCards Summary for LOC100129203 Gene

LOC100129203 (Uncharacterized LOC100129203) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129203 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129203 Gene

Genomics for LOC100129203 Gene

GeneHancer (GH) Regulatory Elements for LOC100129203 Gene

Promoters and enhancers for LOC100129203 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I095228 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 +0.7 712 5.8 HDGF PKNOX1 ATF1 SMAD1 ARNT SIN3A FEZF1 ZNF2 YY1 GLIS2 LOC100129203 SESN3 MRE11 FGFR3P2 CEP57 FAM76B LOC101929295
GH11I095221 Enhancer 0.5 dbSUPER 0.4 -6.1 -6095 5.8 ZNF316 HMBOX1 ZBTB33 SPI1 LOC101929295 LOC100129203 SESN3 ENSG00000282834
GH11I095203 Promoter 0.6 EPDnew 0.3 -26.2 -26214 0.1 REST SESN3 ENSG00000282834 LOC101929295 LOC100129203
GH11I095210 Enhancer 0.4 dbSUPER 0.4 -19.2 -19181 1.9 CEBPB ATF2 SESN3 LOC101929295 ENSG00000282834 LOC100129203
GH11I095212 Enhancer 0.3 dbSUPER 0.4 -16.0 -15988 3.6 ZBTB33 LOC101929295 ENSG00000282834 LOC100129203 SESN3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129203 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129203 gene promoter:

Genomic Locations for LOC100129203 Gene

Genomic Locations for LOC100129203 Gene
chr11:95,230,186-95,234,404
(GRCh38/hg38)
Size:
4,219 bases
Orientation:
Plus strand
chr11:94,964,591-94,967,568
(GRCh37/hg19)

Genomic View for LOC100129203 Gene

Genes around LOC100129203 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129203 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129203 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129203 Gene

Proteins for LOC100129203 Gene

Post-translational modifications for LOC100129203 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129203 Gene

Domains & Families for LOC100129203 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129203 Gene

Function for LOC100129203 Gene

Phenotypes From GWAS Catalog for LOC100129203 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129203 Gene

Localization for LOC100129203 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129203 Gene

Pathways & Interactions for LOC100129203 Gene

SuperPathways for LOC100129203 Gene

No Data Available

Interacting Proteins for LOC100129203 Gene

Gene Ontology (GO) - Biological Process for LOC100129203 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129203 Gene

Drugs & Compounds for LOC100129203 Gene

No Compound Related Data Available

Transcripts for LOC100129203 Gene

mRNA/cDNA for LOC100129203 Gene

(3) Additional mRNA sequences :

Unigene Clusters for LOC100129203 Gene

Uncharacterized LOC100129203:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129203 Gene

No ASD Table

Relevant External Links for LOC100129203 Gene

GeneLoc Exon Structure for
LOC100129203

Expression for LOC100129203 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129203 Gene

mRNA expression in normal human tissues for LOC100129203 Gene

SOURCE GeneReport for Unigene cluster for LOC100129203 Gene:

Hs.191599
genes like me logo Genes that share expression patterns with LOC100129203: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129203 Gene

Orthologs for LOC100129203 Gene

No data available for Orthologs and Evolution for LOC100129203 Gene

Paralogs for LOC100129203 Gene

No data available for Paralogs for LOC100129203 Gene

Variants for LOC100129203 Gene

Sequence variations from dbSNP and Humsavar for LOC100129203 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000146597 -- 95,234,281(+) C/T non_coding_transcript_variant
rs1000931198 -- 95,232,412(+) C/T intron_variant
rs1000941059 -- 95,229,175(+) ACATAACATAA/ACATAA upstream_transcript_variant
rs1001710586 -- 95,228,915(+) A/G upstream_transcript_variant
rs1001784564 -- 95,232,057(+) C/A non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129203 Gene

Variant ID Type Subtype PubMed ID
nsv1050445 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129203 Gene

Disorders for LOC100129203 Gene

Additional Disease Information for LOC100129203

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LOC100129203 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129203 Gene

Publications for LOC100129203 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 44 58

Products for LOC100129203 Gene

Sources for LOC100129203 Gene

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