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Aliases for LOC100129175 Gene

Subcategory (RNA class) for LOC100129175 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129175 Gene

  • Uncharacterized LOC100129175 3
  • Novel Transcript, Antisense To CCDC108 5
  • AC097468.1 5

External Ids for LOC100129175 Gene

Previous GeneCards Identifiers for LOC100129175 Gene

  • GC02U901480
  • GC02P219572
  • GC02P219867

Summaries for LOC100129175 Gene

GeneCards Summary for LOC100129175 Gene

LOC100129175 (Uncharacterized LOC100129175) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129175 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129175 Gene

Genomics for LOC100129175 Gene

GeneHancer (GH) Regulatory Elements for LOC100129175 Gene

Promoters and enhancers for LOC100129175 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J218997 Promoter/Enhancer 1.9 FANTOM5 Ensembl ENCODE dbSUPER 600.7 -1.7 -1692 5.8 ELF3 CTCF RERE ZSCAN21 TFE3 ZBTB7A SP7 POLR2A SP1 HNF1A LOC100129175 MIR375 FEV PNKD CRYBA2 CFAP65
GH02J218829 Promoter/Enhancer 2.1 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.6 -170.0 -169960 5.2 MAFK PKNOX1 ZNF600 ZIC2 CEBPB RCOR1 JUND ZFHX2 BCOR ZNF768 PRKAG3 WNT6 PLCD4 STK36 RNF25 MIR375 LOC100129175 SLC11A1 RPL23AP31
GH02J219121 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 10.8 +123.0 123024 7.5 ELF3 CBFA2T2 MLLT1 CEBPG RERE SP7 SP1 HNF1A PPARG SP5 GC02P219123 SLC23A3 NHEJ1 IHH LOC100129175 MIR375 CRYBA2 FEV LINC00608 RETREG2
GH02J219059 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 10.7 +57.7 57697 3.3 ELF3 RERE TFE3 SP1 HNF1A PPARG SP5 RAD21 KAT8 GLIS2 IHH MIR3131 LOC100129175 MIR375 NHEJ1 SLC23A3
GH02J219080 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.1 +82.3 82270 7.4 ELF3 RERE TFE3 HNF1A SP5 ZNF644 KAT8 IKZF1 SOX13 IKZF2 IHH NHEJ1 SLC23A3 MIR375 LOC100129175 MIR153-1 PTPRN RESP18 ENSG00000272644 RN7SL764P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129175 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129175 Gene

Genomic Locations for LOC100129175 Gene
chr2:219,002,215-219,015,722
(GRCh38/hg38)
Size:
13,508 bases
Orientation:
Plus strand
chr2:219,866,937-219,880,443
(GRCh37/hg19)
Size:
13,507 bases
Orientation:
Plus strand

Genomic View for LOC100129175 Gene

Genes around LOC100129175 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129175 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129175 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129175 Gene

Proteins for LOC100129175 Gene

Post-translational modifications for LOC100129175 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129175 Gene

Domains & Families for LOC100129175 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129175 Gene

Function for LOC100129175 Gene

Phenotypes From GWAS Catalog for LOC100129175 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129175 Gene

Localization for LOC100129175 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129175 Gene

Pathways & Interactions for LOC100129175 Gene

PathCards logo

SuperPathways for LOC100129175 Gene

No Data Available

Interacting Proteins for LOC100129175 Gene

Gene Ontology (GO) - Biological Process for LOC100129175 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129175 Gene

Drugs & Compounds for LOC100129175 Gene

No Compound Related Data Available

Transcripts for LOC100129175 Gene

mRNA/cDNA for LOC100129175 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129175 Gene

No ASD Table

Relevant External Links for LOC100129175 Gene

GeneLoc Exon Structure for
LOC100129175

Expression for LOC100129175 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129175 Gene

Orthologs for LOC100129175 Gene

Evolution for LOC100129175 Gene

ENSEMBL:
Gene Tree for LOC100129175 (if available)
TreeFam:
Gene Tree for LOC100129175 (if available)

No data available for Orthologs for LOC100129175 Gene

Paralogs for LOC100129175 Gene

No data available for Paralogs for LOC100129175 Gene

Variants for LOC100129175 Gene

Sequence variations from dbSNP and Humsavar for LOC100129175 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000243978 -- 219,010,820(+) C/T intron_variant
rs1000816287 -- 219,016,054(+) A/G downstream_transcript_variant
rs1000843066 -- 219,010,395(+) G/A/C/T intron_variant
rs1001069259 -- 219,005,739(+) T/C intron_variant
rs1001123964 -- 219,015,820(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129175 Gene

Variant ID Type Subtype PubMed ID
nsv584491 CNV loss 21841781
nsv834542 CNV gain 17160897
nsv954839 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129175 Gene

Disorders for LOC100129175 Gene

No disorders were found for LOC100129175 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129175 Gene

Publications for LOC100129175 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

No data available for External Links for LOC100129175 Gene

Products for LOC100129175 Gene

Sources for LOC100129175 Gene

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