Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC100129175 Gene

Subcategory (RNA class) for LOC100129175 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129175 Gene

  • Uncharacterized LOC100129175 3
  • AC097468.1 5

External Ids for LOC100129175 Gene

Previous GeneCards Identifiers for LOC100129175 Gene

  • GC02U901480
  • GC02P219572
  • GC02P219867

Summaries for LOC100129175 Gene

GeneCards Summary for LOC100129175 Gene

LOC100129175 (Uncharacterized LOC100129175) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129175 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129175 Gene

Genomics for LOC100129175 Gene

GeneHancer (GH) Regulatory Elements for LOC100129175 Gene

Promoters and enhancers for LOC100129175 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J218997 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 650.7 -1.6 -1555 6 CLOCK FOXA2 MLX ARID4B SIN3A ZNF2 YY1 ZNF143 FOS KLF13 LOC100129175 MIR375 PNKD FEV CRYBA2 CFAP65
GH02J218829 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.6 -170.0 -169960 5.2 BCOR ZNF768 PKNOX1 JUN ZMYM3 ZIC2 ZFHX2 GATA3 RCOR1 ZNF600 PRKAG3 WNT6 PLCD4 RNF25 STK36 LOC100129175 MIR375 SLC11A1 RPL23AP31
GH02J219121 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.8 +122.9 122854 7.2 CLOCK ATF1 FOXA2 ARID4B YBX1 TCF12 FOS ATF7 RUNX3 NFKBIZ SLC23A3 NHEJ1 IHH MIR375 LOC100129175 FEV CRYBA2 LINC00608 RETREG2 CNPPD1
GH02J219110 Enhancer 1.1 ENCODE dbSUPER 11.4 +110.1 110067 3 FOXA2 MLX ARID4B ZNF48 YY1 SLC30A9 NFKBIZ RXRA SP5 ZHX2 IHH MIR375 LOC100129175 CRYBA2 FEV LINC00608 PTPRN NHEJ1 ENSG00000235024 CDK5R2
GH02J219070 Enhancer 1.1 ENCODE dbSUPER 10.8 +70.2 70174 4 ELF3 FOXA2 MLX ZSCAN9 RAD21 RARA ZNF614 ZNF143 CREM THAP11 NHEJ1 SLC23A3 LOC100129175 MIR375 PTPRN ZFAND2B ENSG00000272644 RN7SL764P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129175 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129175 Gene

Genomic Locations for LOC100129175 Gene
chr2:219,002,215-219,015,722
(GRCh38/hg38)
Size:
13,508 bases
Orientation:
Plus strand
chr2:219,866,937-219,880,443
(GRCh37/hg19)
Size:
13,507 bases
Orientation:
Plus strand

Genomic View for LOC100129175 Gene

Genes around LOC100129175 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129175 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129175 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129175 Gene

Proteins for LOC100129175 Gene

Post-translational modifications for LOC100129175 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129175 Gene

Domains & Families for LOC100129175 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129175 Gene

Function for LOC100129175 Gene

Phenotypes From GWAS Catalog for LOC100129175 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129175 Gene

Localization for LOC100129175 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129175 Gene

Pathways & Interactions for LOC100129175 Gene

SuperPathways for LOC100129175 Gene

No Data Available

Interacting Proteins for LOC100129175 Gene

Gene Ontology (GO) - Biological Process for LOC100129175 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129175 Gene

Drugs & Compounds for LOC100129175 Gene

No Compound Related Data Available

Transcripts for LOC100129175 Gene

mRNA/cDNA for LOC100129175 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129175 Gene

No ASD Table

Relevant External Links for LOC100129175 Gene

GeneLoc Exon Structure for
LOC100129175

Expression for LOC100129175 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129175 Gene

genes like me logo Genes that share expression patterns with LOC100129175: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129175 Gene

Orthologs for LOC100129175 Gene

Evolution for LOC100129175 Gene

ENSEMBL:
Gene Tree for LOC100129175 (if available)
TreeFam:
Gene Tree for LOC100129175 (if available)

No data available for Orthologs for LOC100129175 Gene

Paralogs for LOC100129175 Gene

No data available for Paralogs for LOC100129175 Gene

Variants for LOC100129175 Gene

Sequence variations from dbSNP and Humsavar for LOC100129175 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000243978 -- 219,010,820(+) C/T intron_variant
rs1000816287 -- 219,016,054(+) A/G downstream_transcript_variant
rs1000843066 -- 219,010,395(+) G/C/T intron_variant
rs1001069259 -- 219,005,739(+) T/C intron_variant
rs1001123964 -- 219,015,820(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129175 Gene

Variant ID Type Subtype PubMed ID
nsv954839 CNV deletion 24416366
nsv834542 CNV gain 17160897
nsv584491 CNV loss 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129175 Gene

Disorders for LOC100129175 Gene

Additional Disease Information for LOC100129175

No disorders were found for LOC100129175 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129175 Gene

Publications for LOC100129175 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC100129175 Gene

Sources for LOC100129175 Gene

Content
Loading form....