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Aliases for LOC100129148 Gene

Subcategory (RNA class) for LOC100129148 Gene

ncRNA

Quality Score for this RNA gene is

13

Aliases for LOC100129148 Gene

  • Uncharacterized LOC100129148 3

External Ids for LOC100129148 Gene

Previous GeneCards Identifiers for LOC100129148 Gene

  • GC07U901873
  • GC07M138752
  • GC07M139102

Summaries for LOC100129148 Gene

GeneCards Summary for LOC100129148 Gene

LOC100129148 (Uncharacterized LOC100129148) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC100129148 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129148 Gene

Genomics for LOC100129148 Gene

GeneHancer (GH) Regulatory Elements for LOC100129148 Gene

Promoters and enhancers for LOC100129148 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J139421 Enhancer 0.7 ENCODE 0.4 +5.4 5376 0.8 HDAC1 MEIS2 PKNOX1 CC2D1A ZNF766 GATA3 GATA2 FOXK2 POLR2A ADNP LOC100129148 GC07P139363 C7orf55-LUC7L2 LUC7L2
GH07J139367 Promoter/Enhancer 1.1 EPDnew dbSUPER 0.2 +59.8 59794 0.1 ZNF189 MAFG EBF1 MEF2B BATF ATF2 ZNF316 NFE2 EMSY ZBTB17 LUC7L2 FMC1 GC07P139363 C7orf55-LUC7L2 LOC100129148
GH07J139417 Promoter 0.5 EPDnew 0.4 +9.8 9814 0.1 LUC7L2 LOC100129148 GC07P139363 C7orf55-LUC7L2
GH07J139409 Promoter 0.5 EPDnew 0.4 +17.9 17889 0.1 LUC7L2 FMC1 LOC100129148 GC07P139363 C7orf55-LUC7L2
GH07J139412 Promoter 0.5 EPDnew 0.4 +15.0 14963 0.1 LUC7L2 FMC1 ENSG00000273391 LOC100129148 GC07P139363 C7orf55-LUC7L2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129148 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC100129148 gene promoter:
  • USF2
  • USF1
  • USF-1:USF-2
  • USF-1
  • Meis-1
  • Meis-1a
  • Meis-1b
  • ZID
  • Evi-1
  • MyoD

Genomic Locations for LOC100129148 Gene

Genomic Locations for LOC100129148 Gene
chr7:139,417,462-139,427,526
(GRCh38/hg38)
Size:
10,065 bases
Orientation:
Minus strand
chr7:139,102,208-139,112,272
(GRCh37/hg19)
Size:
10,065 bases
Orientation:
Minus strand

Genomic View for LOC100129148 Gene

Genes around LOC100129148 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129148 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129148 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129148 Gene

Proteins for LOC100129148 Gene

Post-translational modifications for LOC100129148 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129148 Gene

Domains & Families for LOC100129148 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129148 Gene

Function for LOC100129148 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129148 Gene

Localization for LOC100129148 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129148 Gene

Pathways & Interactions for LOC100129148 Gene

SuperPathways for LOC100129148 Gene

No Data Available

Interacting Proteins for LOC100129148 Gene

Gene Ontology (GO) - Biological Process for LOC100129148 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129148 Gene

Drugs & Compounds for LOC100129148 Gene

No Compound Related Data Available

Transcripts for LOC100129148 Gene

mRNA/cDNA for LOC100129148 Gene

(1) Additional mRNA sequences :
(1) RNA Central transcripts :

Unigene Clusters for LOC100129148 Gene

Uncharacterized LOC100129148:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129148 Gene

No ASD Table

Relevant External Links for LOC100129148 Gene

GeneLoc Exon Structure for
LOC100129148

Expression for LOC100129148 Gene

SOURCE GeneReport for Unigene cluster for LOC100129148 Gene:

Hs.744449
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129148 Gene

Orthologs for LOC100129148 Gene

No data available for Orthologs and Evolution for LOC100129148 Gene

Paralogs for LOC100129148 Gene

No data available for Paralogs for LOC100129148 Gene

Variants for LOC100129148 Gene

Sequence variations from dbSNP and Humsavar for LOC100129148 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000203575 -- 139,426,382(-) G/A intron_variant
rs1000225053 -- 139,419,382(-) T/G intron_variant
rs1000667472 -- 139,419,892(-) C/T intron_variant
rs1000681905 -- 139,419,658(-) G/A intron_variant
rs1000767300 -- 139,425,922(-) A/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129148 Gene

Variant ID Type Subtype PubMed ID
nsv1149610 CNV deletion 26484159
nsv1076957 CNV deletion 25765185
esv5284 CNV loss 18987735
esv3542513 CNV deletion 23714750
esv2735232 CNV deletion 23290073
esv2735212 CNV deletion 23290073
esv2584872 CNV deletion 19546169
esv2275505 CNV deletion 18987734

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129148 Gene

Disorders for LOC100129148 Gene

Additional Disease Information for LOC100129148

No disorders were found for LOC100129148 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129148 Gene

Publications for LOC100129148 Gene

  1. Long non-coding RNA LOC100129148 functions as an oncogene in human nasopharyngeal carcinoma by targeting miR-539-5p. (PMID: 28328537) Sun KY … Zhou XH (Aging 2017) 3 58

Products for LOC100129148 Gene

Sources for LOC100129148 Gene

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