Aliases for LOC100129138 Gene

Aliases for LOC100129138 Gene

  • THAP Domain Containing 3 Pseudogene 3
  • THAP Domain Containing, Apoptosis Associated Protein 3 (THAP3) Pseudogene 5
  • THAP Domain Containing, Apoptosis Associated Protein 3 Pseudogene 3
  • AC092506.1 5

External Ids for LOC100129138 Gene

Previous GeneCards Identifiers for LOC100129138 Gene

  • GC01U902000
  • GC01P104325
  • GC01P104523
  • GC01P104617

Summaries for LOC100129138 Gene

GeneCards Summary for LOC100129138 Gene

LOC100129138 (THAP Domain Containing 3 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129138 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LOC100129138 Gene

Genomics for LOC100129138 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LOC100129138 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J104073 Promoter 0.5 Ensembl 255.4 +0.3 318 0.6 YY1 GABPB1 LOC100129138 lnc-AMY1C-2 LOC105378879 AMY1C
GH01J104092 Enhancer 0.4 Ensembl 4.7 +19.8 19818 1.6 SP1 POU5F1 NANOG LOC100129138 lnc-AMY1C-2 LOC105378879 AMY1C
GH01J104084 Enhancer 0.2 Ensembl 4.5 +11.6 11618 0.8 LOC100129138 lnc-AMY1C-2 LOC105378879 AMY1C
GH01J104132 Enhancer 0.4 Ensembl 0.2 +59.6 59618 0.8 ZNF654 CTCF RAD21 SMC3 LOC105378879 HSALNG0005655 LOC100129138 AMY1C
GH01J104121 Enhancer 0.3 Ensembl 0.3 +48.4 48418 0.4 CEBPB LOC105378879 LOC100129138 lnc-AMY1C-2 AMY1C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LOC100129138 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LOC100129138 Gene

Latest Assembly
chr1:104,072,983-104,226,678
(GRCh38/hg38)
Size:
153,696 bases
Orientation:
Plus strand

Previous Assembly
chr1:104,615,645-104,619,708
(GRCh37/hg19 by Entrez Gene)
Size:
4,064 bases
Orientation:
Plus strand

chr1:104,615,645-104,619,709
(GRCh37/hg19 by Ensembl)
Size:
4,065 bases
Orientation:
Plus strand

Genomic View for LOC100129138 Gene

Genes around LOC100129138 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129138 Gene

Proteins for LOC100129138 Gene

Post-translational modifications for LOC100129138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129138 Gene

Domains & Families for LOC100129138 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LOC100129138 Gene

Function for LOC100129138 Gene

Phenotypes From GWAS Catalog for LOC100129138 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129138 Gene

Localization for LOC100129138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129138 Gene

Pathways & Interactions for LOC100129138 Gene

PathCards logo

SuperPathways for LOC100129138 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LOC100129138 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LOC100129138 Gene

Drugs & Compounds for LOC100129138 Gene

No Compound Related Data Available

Transcripts for LOC100129138 Gene

mRNA/cDNA for LOC100129138 Gene

1 NCBI additional mRNA sequence :
5 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129138 Gene

No ASD Table

Relevant External Links for LOC100129138 Gene

GeneLoc Exon Structure for
LOC100129138

Expression for LOC100129138 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC100129138 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129138 Gene

This gene is overexpressed in Testis (x14.9).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LOC100129138

SOURCE GeneReport for Unigene cluster for LOC100129138 Gene:

Hs.514487
genes like me logo Genes that share expression patterns with LOC100129138: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129138 Gene

Orthologs for LOC100129138 Gene

Evolution for LOC100129138 Gene

ENSEMBL:
Gene Tree for LOC100129138 (if available)
TreeFam:
Gene Tree for LOC100129138 (if available)

No data available for Orthologs for LOC100129138 Gene

Paralogs for LOC100129138 Gene

No data available for Paralogs for LOC100129138 Gene

Variants for LOC100129138 Gene

Structural Variations from Database of Genomic Variants (DGV) for LOC100129138 Gene

Variant ID Type Subtype PubMed ID
dgv230n100 CNV gain 25217958
dgv231n100 CNV loss 25217958
esv3893912 CNV gain 25118596
nsv1010903 CNV loss 25217958
nsv1014507 CNV loss 25217958

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , dbSNP identifiers (rs#s) for variants without ClinVar clinical significance , Variation tolerance and Additional Variant Information for LOC100129138 Gene

Disorders for LOC100129138 Gene

No disorders were found for LOC100129138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129138 Gene

Publications for LOC100129138 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LOC100129138 Gene

Products for LOC100129138 Gene

Sources for LOC100129138 Gene