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Aliases for LOC100129138 Gene

Aliases for LOC100129138 Gene

  • THAP Domain Containing 3 Pseudogene 3
  • THAP Domain Containing, Apoptosis Associated Protein 3 Pseudogene 3
  • AC092506.1 5

External Ids for LOC100129138 Gene

Previous GeneCards Identifiers for LOC100129138 Gene

  • GC01U902000
  • GC01P104325
  • GC01P104523
  • GC01P104617

Summaries for LOC100129138 Gene

GeneCards Summary for LOC100129138 Gene

LOC100129138 (THAP Domain Containing 3 Pseudogene) is a Pseudogene.

Additional gene information for LOC100129138 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129138 Gene

Genomics for LOC100129138 Gene

Genomic Locations for LOC100129138 Gene

Genomic Locations for LOC100129138 Gene
chr1:104,072,983-104,226,678
(GRCh38/hg38)
Size:
153,696 bases
Orientation:
Plus strand
chr1:104,615,645-104,619,709
(GRCh37/hg19)
Size:
4,065 bases
Orientation:
Plus strand

Genomic View for LOC100129138 Gene

Genes around LOC100129138 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129138 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129138 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129138 Gene

No data available for GeneHancer (GH) Regulatory Elements for LOC100129138 Gene

Proteins for LOC100129138 Gene

Post-translational modifications for LOC100129138 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129138 Gene

Domains & Families for LOC100129138 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129138 Gene

Function for LOC100129138 Gene

Phenotypes From GWAS Catalog for LOC100129138 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129138 Gene

Localization for LOC100129138 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129138 Gene

Pathways & Interactions for LOC100129138 Gene

SuperPathways for LOC100129138 Gene

No Data Available

Interacting Proteins for LOC100129138 Gene

Gene Ontology (GO) - Biological Process for LOC100129138 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129138 Gene

Drugs & Compounds for LOC100129138 Gene

No Compound Related Data Available

Transcripts for LOC100129138 Gene

mRNA/cDNA for LOC100129138 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC100129138 Gene

THAP domain containing, apoptosis associated protein 3 pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129138 Gene

No ASD Table

Relevant External Links for LOC100129138 Gene

GeneLoc Exon Structure for
LOC100129138

Expression for LOC100129138 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129138 Gene

mRNA differential expression in normal tissues according to GTEx for LOC100129138 Gene

This gene is overexpressed in Testis (x14.9).

SOURCE GeneReport for Unigene cluster for LOC100129138 Gene:

Hs.514487
genes like me logo Genes that share expression patterns with LOC100129138: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129138 Gene

Orthologs for LOC100129138 Gene

Evolution for LOC100129138 Gene

ENSEMBL:
Gene Tree for LOC100129138 (if available)
TreeFam:
Gene Tree for LOC100129138 (if available)

No data available for Orthologs for LOC100129138 Gene

Paralogs for LOC100129138 Gene

No data available for Paralogs for LOC100129138 Gene

Variants for LOC100129138 Gene

Sequence variations from dbSNP and Humsavar for LOC100129138 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000112393 -- 104,071,979(+) A/T upstream_transcript_variant
rs1000547703 -- 104,072,277(+) C/G upstream_transcript_variant
rs1000589256 -- 104,075,230(+) A/G intron_variant
rs1001154424 -- 104,073,487(+) A/G non_coding_transcript_variant
rs1002612622 -- 104,072,776(+) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC100129138 Gene

Variant ID Type Subtype PubMed ID
nsv1014507 CNV loss 25217958
nsv1010903 CNV loss 25217958
esv3893912 CNV gain 25118596
dgv231n100 CNV loss 25217958
dgv230n100 CNV gain 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC100129138 Gene

Disorders for LOC100129138 Gene

Additional Disease Information for LOC100129138

No disorders were found for LOC100129138 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC100129138 Gene

Publications for LOC100129138 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC100129138 Gene

Sources for LOC100129138 Gene

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