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Aliases for LOC100129100 Gene

Aliases for LOC100129100 Gene

  • Uncharacterized Protein C12orf29 Homolog 3
  • AC090568.1 5

External Ids for LOC100129100 Gene

Previous GeneCards Identifiers for LOC100129100 Gene

  • GC08U901036
  • GC08P089410
  • GC08P089340

Summaries for LOC100129100 Gene

GeneCards Summary for LOC100129100 Gene

LOC100129100 (Uncharacterized Protein C12orf29 Homolog) is a Pseudogene.

Additional gene information for LOC100129100 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC100129100 Gene

Genomics for LOC100129100 Gene

GeneHancer (GH) Regulatory Elements for LOC100129100 Gene

Promoters and enhancers for LOC100129100 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J088424 Enhancer 0.6 ENCODE 0.7 +5.0 4980 1.5 CTCF PKNOX1 USF1 RFX5 SP1 SREBF1 JUND FOS FOSL2 MMP16 LOC100129100 ENSG00000253553 LOC105375629
GH08J088554 Enhancer 0.6 ENCODE 0.1 +134.4 134360 0.2 SMARCA5 SIX4 CTCF PKNOX1 RAD21 SREBF1 GATA3 CREB1 MMP16 LOC105375629 LOC100129100 ENSG00000253553
GH08J088590 Enhancer 0.6 ENCODE 0.1 +171.6 171565 2.5 USF1 NANOG MAX SIN3A USF2 ATF2 SP1 POLR2A POU5F1 MMP16 LOC105375629 LOC100129100 ENSG00000253553
GH08J088565 Enhancer 0.5 ENCODE 0.1 +145.7 145660 0.2 SP1 NANOG POLR2A POU5F1 LOC105375629 LOC100129100 ENSG00000253553
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC100129100 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC100129100 Gene

Genomic Locations for LOC100129100 Gene
chr8:88,420,307-88,486,094
(GRCh38/hg38)
Size:
65,788 bases
Orientation:
Plus strand
chr8:89,340,724-89,498,323
(GRCh37/hg19)
Size:
157,600 bases
Orientation:
Plus strand

Genomic View for LOC100129100 Gene

Genes around LOC100129100 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC100129100 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC100129100 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC100129100 Gene

Proteins for LOC100129100 Gene

Post-translational modifications for LOC100129100 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC100129100 Gene

Domains & Families for LOC100129100 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC100129100 Gene

Function for LOC100129100 Gene

Phenotypes From GWAS Catalog for LOC100129100 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC100129100 Gene

Localization for LOC100129100 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC100129100 Gene

Pathways & Interactions for LOC100129100 Gene

SuperPathways for LOC100129100 Gene

No Data Available

Interacting Proteins for LOC100129100 Gene

Gene Ontology (GO) - Biological Process for LOC100129100 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC100129100 Gene

Drugs & Compounds for LOC100129100 Gene

No Compound Related Data Available

Transcripts for LOC100129100 Gene

mRNA/cDNA for LOC100129100 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC100129100 Gene

No ASD Table

Relevant External Links for LOC100129100 Gene

GeneLoc Exon Structure for
LOC100129100

Expression for LOC100129100 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC100129100 Gene

genes like me logo Genes that share expression patterns with LOC100129100: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC100129100 Gene

Orthologs for LOC100129100 Gene

Evolution for LOC100129100 Gene

ENSEMBL:
Gene Tree for LOC100129100 (if available)
TreeFam:
Gene Tree for LOC100129100 (if available)

No data available for Orthologs for LOC100129100 Gene

Paralogs for LOC100129100 Gene

No data available for Paralogs for LOC100129100 Gene

Variants for LOC100129100 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC100129100 Gene

Disorders for LOC100129100 Gene

No disorders were found for LOC100129100 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC100129100 Gene

Publications for LOC100129100 Gene

  1. Genome-wide association scan of dental caries in the permanent dentition. (PMID: 23259602) Wang X … Marazita ML (BMC oral health 2012) 3 58
  2. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3 58

Products for LOC100129100 Gene

Sources for LOC100129100 Gene

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